MmuINT0021716 @ mm10
Intron Retention
Gene
ENSMUSG00000037685 | Atp8a1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:MGI Symbol;Acc:MGI:1330848]
Coordinates
chr5:67756650-67761202:-
Coord C1 exon
chr5:67761114-67761202
Coord A exon
chr5:67756695-67761113
Coord C2 exon
chr5:67756650-67756694
Length
4419 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
TTCTGTCCCTCCTCCTGAAGCCA
3' ss Score
6.43
Exon sequences
Seq C1 exon
GTTAAATACATATTTTCTGACAAAACTGGGACCCTGACATGCAATGTGATGCAGTTCAAGAAGTGCACCATCGCGGGCGTGGCCTATGG
Seq A exon
GTGAGCACTTCCCCTTATCTTGGTGTCTGAAATGCACATGTGATCCCATCCACTCGGAAGAGTTGGAATTTGGGGGGCAAGGTTTGGGTTTTGTGAGAGTTTGGGTTTTGCCTTTTGAATCTAGAAAGAGGCTCCTTTTACCTCCGCATGGATGGGTTGTGTATTTTACGGTTGCTCTTGCTTTCCTTGGATGGTGAGATCAGGTAGAGACTGACTGATGGCCTCCCAGTGCTTAGGGCAAGGGATGATCGCCATCTGGGCCTGGTGCTAAGGACAAACCATTTCCCTTTATTCTGCCCTAGGTTAGGGTGCAGTATATATGTGGGAAGAAACACAGGAAGAGCCCTCAGTCAGGTCTTAAGTAACACTGCCATTGCTTTGATGACACCCCCACCCCCATTTTATCTTTGGTCGAGTCTCCTCTTTGCAGTCACAGAACAGTGTAAAATTCTGGTGATGGGATGAAGGGAGGACAAGGACATCTTCAATCTGGAGAGCAGTGTCCTTCAGATTGGGTGTGGAATCTGTTTAGTTTACTTCTCATTATAGGCATGCATACCTAAACCATTCAGAAACCTGCTCCTTCTGACTGAAGGCCCAGGCCTTATCAGCAAATTTTGCATTTCTCCTTACCTCAGTGAGGCAAGGATCCATGGGTCCAGCTTGCACCCACTGTTTTCATTCATACTCTAGCTTTAAGTCAGGAGGAAAGGAACATTAATTGCTGAAAATATCTTCAACTAAATTTATTATTAATACAATGTCTGCAAACAGGAGTGGAGACAGATATGTTTGCTCTTTAGGCCAGGAGAGAGTTTGATTCAAAATGACTTTAGCCTGTGGATACAGCTGATTGGATGACTGTAAAGTTTTAAGAGGAACACTGACTTTCAAGTTTGCTGGGTTTGTTTGGCTTGGTTTTTTGTTTTGTTGTTTTGTTTCTTTATCTGAAGCCTCTTTTTAGATAAAATTGCTCTCCCGGAGTCTCCCCAGACTTGTTCCTGGCGCAGGGGAATCATAGTCCCGTTCTTTGACATCAAGTGCTTACACTATCTACACGCAGTTAGTCCAGAGATAGTAAAGGCTCCTCATTATGGGTTTTTCATAGGCTAAAAGCAGGCTCTTAATTGCCCCCAGCCACATGTACAGAAGCAGAACTCTTCCCTGGTCTGTTGATAACTCCTTAAAGCACTAGTGTGTGAAGACAGGGTGGCTTTGACAAATGTCTGTCCTGTCAGTTAGAAGGTCAATGAAATGTCTTGGTGAGAACACTCCCTAAGAATGAAGTGAAGAGATAAGGTATGAATTCTACCTTATCCACAGTCTATTAAACAACCAGGACGGCTCCTTTAGTTATTGTTACTTTATTTTTATTTTGTGGGACCAGACATTTGATCATTATAAACAAATGAAGGTTCTTACAAACAAGCTGTGTCTTTACTGACCACAGAATGCCAGTAGTTTACACGTCAGGTTTTGTTTACAAATGGAGTCTTAGATGTCCTCATGTGACCTTCAACAATTTCCTTTCAGATGTTCTTAGCTCTGCGGGACTCAATAAAGAGGAAAACCGGACAATCTCTTAGGTCCCAATAGTAGAGTTTCCGTTGGTTTTCTATATCCAGTGGTTTCATAGGGATAGGTGTTTAACACCAATGCTTCATTCAGAATTTCATTTTAATAAAGTATCTCTCAATTCACTTAAGCTTTGCCTCAGACTTTTCCTTTTTGAATTTCATGACAGACAACGAAATTCAAAGAAAGTTAGCAGTGACTATTTCACAGAAATTAATTTTGTGGTAGGAATGCCTCTGTTTAAACTTACTGGTTTGTTTGTTTGATTGTTTGTTTTTGGTTTTGTTTTGTTTTTTTTAACCTTAGATCATCTTATGGGGAAGTTGTAATTAAATATAAATAAAGTTATATTTATCAATTCATCTTGCTACAAACTAGGAATTACACTATAAACCTTTAGGAGAGTCTCAGTGTAACAGGTTACACTATGGAAATGCCTGTGCGTATTATAATCAATTGCAAATCTGCAATAGATAAGAACTTCTCTGTTCACTGGCTGGAGTTCTCAATGCCTTGAAGATTTGAAACATTTTCCTTATATCCTGATTGTCCACAATATAGTCTGGGGCTGAAAAGCAGTCAGCAATTTAATCTATACTAGCTCTGGGGCAGAAAAACAGTCTATTAAGCAACCTGAATGACTCTTTTTGTCATTGTTATTTTATTTGTATTTCGTGGTGAAAACAAATGAAGATTCCATGTCCATACTTACTAACGAATGTCAATATTTTACAGGGCAGGTTTTGTTTACAAATAGTATGTTTAGGCGGAGATGACTAATCCTACAAACCCGAGGAGAGACTCATCAGGTTACCATACGCCTAGCCCCAAGGACTAGATTACAGCCAGTAGGTGTGTCTGGTGGCCAACCTTGACCTGTCATTTGCATATAAGAGAAGAAGCCGGCCTCCTGCAGCTGGCTCTTGGTTAGGTAGTAGAAACCTAGTCAAGCAGAGTTTGCATGGTTCCCACTCAGAGTTCACAGTCTAACTGGGGTTAATAGATATTAATTAATTATAATACAACAGTAGTCCTAATACGAGGCAAGAATCAGTGTGAGCCTCAGATGGTGTGAAGTTATCTAAAGACTAAGGTCAAGGGACGGTTCCTGACAGAGTGATCCTCGAGCCCAGATCTGAGAAGGAGTTTAAATGAACTCCCCAGACAGCTATGACCACACTGGCATGCCTTGCCCTTGGGCCAGTAGCCAGATAGCTGGCCAACACAAGAGCTGCCAAGCTGCAGTCATAGAAACTCATGGAAACAAGTCACCTGCTGCCCACCACCCTCTGAACGAATGGTGGTACTTCGCTTCTGCCAGGGCTGCACCAGACTCCAGGGAAGGCACTGTGGCCCTTGTGTTCCGTGGCTGTTAAGCCTCAGGATTTTGGAAGCATTAGGTCCAGTGCTGGTGTGAAACAGTGAGCAGGGACCCAGTACCAGTGCAAGCTGGCAGGGCCTTCTCGCAGTGTTCATTGCTTGGACAGTTACTAGCTCTTCCAGAGACATTACTGACTGCCATTCTGTGCAGTCCAGGAGCTGGGGCCCAAACCTTGAGGGTAATCATAAATGATAGTCCCTGGGGGGCTGCAGCCCATTTCCACAGTGCATTGCCACAGGCTAGCCCCTTTCGTAGGAATCTAGCCTGAGATGGTCAGGGTGAGTCCTTCCTCTTAAAACAGTAAACACAAGCCTTTGGCAGGGAGGAGTCGTGAGCTTTGGGGGTCCCTTTTGCTGTGACTGCTGTTTATCCCTAGGGAAAACTTACTGTGCCGTGACAAGGTTAAAAGAGCAGGCAGTCATTTGGGATGTTAATGACTTCTTATTTATTTATTTATTTATTTATTTATTTATGAGCTGCTTATTATACTTATCAAAAAAAAAAACGATCTCAGCATTTTACACTCTTCCTTCATATAATCGTCTAAATGAAAGTGAAAGTACTGAATTATCATATGTAATGAAAGAAAAAGGAAATAAGAGAATCTATGCTGATATGTATGTTAGGTGTCGTATGAACTATGCCAAGGGGTCCTTCCCTATGTTTCCATGAGCTAGTGGATAAAATTAAAGTATGGATAGAAGACTTTTTTTTTAAAGATTAAAAAGTGGGCTGTTGAGATGGCTCAGTGGGTAAGAGCACTGACTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCACCCGTAATGAGATCTGATGCCCTCTTCTGGTGCGTCTGAAGACAACTACAGTGTACTTACGTATAATAATAAAATAAATCTTTTTTAAAAAAGATTAAAAAGTATTTGATGGGTGGACCATTTTAAATATCAGTGGCTCCATTTAATTAAACAAATACAGTTAACTTTTACTCCCATTACCCTCTTAGGAAGTTATTGTGTCAAGCCAGTCAAAGCTTCCTGAAAATTATACAACAGATTTTTTTTAATGTGTGACGTGCCCATTTTTTAACTGTGCCCGACATGACTAGCATGTATGTATCATTGAAACACATTGTTATGGTTATAAATATAAATAATGCACTTCCTACTGGCTCTATAGCATATGTTTCAACAGCTAAATTTAAACATATTCAATACTAAATTTTGACCTCTATGCACCGTTCAATTCTGGGGTACAGGGTACCTTTGTAAATCCACTTGGTTACCATAAATCCTCATGTTCTCCTCCCTGTACTAACTGCCATTCTCCCAGATCCAACTAAATGTTCATCTTCTTAACTTTCTAGAAACCCGCCTCTCAGCTCTCCTTCTCCATGGTTTTATGTTTCCAGCCTTTCTGTGATTATTTTTCCCTCTCTTTCTGTCCCTCCTCCTGAAG
Seq C2 exon
CCATGTCCCTGAACCTGAGGATTATGGGTGCTCGCCCGATGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037685:ENSMUST00000037380:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.167
Domain overlap (PFAM):
C1:
PF127102=HAD=PU(6.4=86.7)
A:
NA
C2:
PF127102=HAD=FE(3.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types