GgaINT0067954 @ galGal4
Intron Retention
Gene
ENSGALG00000014236 | ATP8A1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:HGNC Symbol;Acc:HGNC:13531]
Coordinates
chr4:67792312-67793833:+
Coord C1 exon
chr4:67792312-67792400
Coord A exon
chr4:67792401-67793788
Coord C2 exon
chr4:67793789-67793833
Length
1388 bp
Sequences
Splice sites
5' ss Seq
TGGGTAGGT
5' ss Score
6.86
3' ss Seq
CTCTCTTGCTTCATGTGCAGCCA
3' ss Score
8.35
Exon sequences
Seq C1 exon
GTCAAATACATATTTTCTGATAAAACGGGTACTCTGACATGCAACGTCATGCAGTTTAAAAAATGTACTGTGGCAGGAGTTGCTTATGG
Seq A exon
GTAGGTATTTTATTATATACTGATTTCCTTATTTGTATGCCTTTCCTCCATCTATGCATATTCGAACACAGTTAAAGTAACACCAAAATAAAAATTATCTTCTGTGCCTGGCAGTAGATGCAACTAGGCATCAATTTGTTTGTGACTGTGAAATGCTATTAATAGGAAGTATATGTGCTTCTTTCTGCAAGCAAAAGTATAGCTATGCTTACTGCTGTAACACAACTTCAGTGTACAACTCTTCCCTCACATTCGCAAAAATGCATGGTCATCCTTATTAGTCCATGCTTCATATTTTACATGGATACATACTTTTTCACTAGATGATACAGAGGATGAACAAGAGTTTGAACTGCTATGCTTTACCCTGTCACCTAGCTGGCTTTTATGAATATTGTTTAAATGGCATAACTCATGGTATTGGTGTTGCTATTAAGAAACCTCTCCAGCTAAGTGCAAACAAATAATTTTCTTACTTACTTGTCAATAGTTACAGCCAAATTCTTCAACTGAGTTTGCAAAGGCTTCAAACTTCCAAGGTGGTTTACTTAAAATAAATCAATTAGAGCAGTGAATAGAGCAGAAGCACCTATATTTTGAGTGACAGCATGGCTGCCCAGTATATGAGATGCTGGACCTAGTCTGATCAATAAGCTGATAATTAGATACCTCTGAAACTGGGCAGAGACCAAGCAGAGTCCATGAGATTGAGTTTATGGCTTAAGCTAGCAGTGTGCCTTTATCATTTGAGTAAAGTAATTTTGAGGATTCTAGTGTCAGCTTTCTGTTTTAAGAAACTTTGATCCTTAACCATTCTGTGTGCTTTTTTCATTTGTTTGTTTTAAATTAAGATCTGTAATAAAGTGCCATTCTAACCCTGATATTTCATATATCTACCTGTACACACACACAACTCTATATCAGCTATGTCAGCTAATTGTGGTATGTTCAAACGTGTCATCACAGGGCTGAATCCTGATGTGCTATGGCTGGCTATGCTCTTGAACATTTTGACAACTCAGATAAGTTTCATTATCATAGCAAAAATAAAAATTTACCTTTCATTTACAATCAAAACATTGTTCAAGTGTATACAGAAATATAAAGTAAGAATTGTAATTTGTTCAACTGGTAGAAGTTAGTAAGCAGGCATGCAGAATGAAAATGGTAGATTTTGTTTTATGAAGCCTCAGGAGAAACATCATATTTTTGCAGTATTTTGTTATTTTTTAGGCTTTAGCAAAATACTCAGTTGAGATAGCTTTACTTTTTTTTTCAGTCACTTAATTTCATTAACTGCCTTCTCTTTTATACATAATCCAATTTTTTTAGCCTTTGTGTTTCTTTTTCCTATCCCTATTTCTCTTCCTCTCTTGCTTCATGTGCAG
Seq C2 exon
CCATTGCCCTGAACCTGAGGACTATAGTGTTCCTTCAGATGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014236:ENSGALT00000023022:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.375
Domain overlap (PFAM):
C1:
PF127102=HAD=PU(6.4=86.7)
A:
NA
C2:
PF127102=HAD=FE(3.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]