MmuINT0021707 @ mm9
Intron Retention
Gene
ENSMUSG00000037685 | Atp8a1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:MGI Symbol;Acc:MGI:1330848]
Coordinates
chr5:68147889-68152441:-
Coord C1 exon
chr5:68152353-68152441
Coord A exon
chr5:68147934-68152352
Coord C2 exon
chr5:68147889-68147933
Length
4419 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
TTCTGTCCCTCCTCCTGAAGCCA
3' ss Score
6.43
Exon sequences
Seq C1 exon
GTTAAATACATATTTTCTGACAAAACTGGGACCCTGACATGCAATGTGATGCAGTTCAAGAAGTGCACCATCGCGGGCGTGGCCTATGG
Seq A exon
GTGAGCACTTCCCCTTATCTTGGTGTCTGAAATGCACATGTGATCCCATCCACTCGGAAGAGTTGGAATTTGGGGGGCAAGGTTTGGGTTTTGTGAGAGTTTGGGTTTTGCCTTTTGAATCTAGAAAGAGGCTCCTTTTACCTCCGCATGGATGGGTTGTGTATTTTACGGTTGCTCTTGCTTTCCTTGGATGGTGAGATCAGGTAGAGACTGACTGATGGCCTCCCAGTGCTTAGGGCAAGGGATGATCGCCATCTGGGCCTGGTGCTAAGGACAAACCATTTCCCTTTATTCTGCCCTAGGTTAGGGTGCAGTATATATGTGGGAAGAAACACAGGAAGAGCCCTCAGTCAGGTCTTAAGTAACACTGCCATTGCTTTGATGACACCCCCACCCCCATTTTATCTTTGGTCGAGTCTCCTCTTTGCAGTCACAGAACAGTGTAAAATTCTGGTGATGGGATGAAGGGAGGACAAGGACATCTTCAATCTGGAGAGCAGTGTCCTTCAGATTGGGTGTGGAATCTGTTTAGTTTACTTCTCATTATAGGCATGCATACCTAAACCATTCAGAAACCTGCTCCTTCTGACTGAAGGCCCAGGCCTTATCAGCAAATTTTGCATTTCTCCTTACCTCAGTGAGGCAAGGATCCATGGGTCCAGCTTGCACCCACTGTTTTCATTCATACTCTAGCTTTAAGTCAGGAGGAAAGGAACATTAATTGCTGAAAATATCTTCAACTAAATTTATTATTAATACAATGTCTGCAAACAGGAGTGGAGACAGATATGTTTGCTCTTTAGGCCAGGAGAGAGTTTGATTCAAAATGACTTTAGCCTGTGGATACAGCTGATTGGATGACTGTAAAGTTTTAAGAGGAACACTGACTTTCAAGTTTGCTGGGTTTGTTTGGCTTGGTTTTTTGTTTTGTTGTTTTGTTTCTTTATCTGAAGCCTCTTTTTAGATAAAATTGCTCTCCCGGAGTCTCCCCAGACTTGTTCCTGGCGCAGGGGAATCATAGTCCCGTTCTTTGACATCAAGTGCTTACACTATCTACACGCAGTTAGTCCAGAGATAGTAAAGGCTCCTCATTATGGGTTTTTCATAGGCTAAAAGCAGGCTCTTAATTGCCCCCAGCCACATGTACAGAAGCAGAACTCTTCCCTGGTCTGTTGATAACTCCTTAAAGCACTAGTGTGTGAAGACAGGGTGGCTTTGACAAATGTCTGTCCTGTCAGTTAGAAGGTCAATGAAATGTCTTGGTGAGAACACTCCCTAAGAATGAAGTGAAGAGATAAGGTATGAATTCTACCTTATCCACAGTCTATTAAACAACCAGGACGGCTCCTTTAGTTATTGTTACTTTATTTTTATTTTGTGGGACCAGACATTTGATCATTATAAACAAATGAAGGTTCTTACAAACAAGCTGTGTCTTTACTGACCACAGAATGCCAGTAGTTTACACGTCAGGTTTTGTTTACAAATGGAGTCTTAGATGTCCTCATGTGACCTTCAACAATTTCCTTTCAGATGTTCTTAGCTCTGCGGGACTCAATAAAGAGGAAAACCGGACAATCTCTTAGGTCCCAATAGTAGAGTTTCCGTTGGTTTTCTATATCCAGTGGTTTCATAGGGATAGGTGTTTAACACCAATGCTTCATTCAGAATTTCATTTTAATAAAGTATCTCTCAATTCACTTAAGCTTTGCCTCAGACTTTTCCTTTTTGAATTTCATGACAGACAACGAAATTCAAAGAAAGTTAGCAGTGACTATTTCACAGAAATTAATTTTGTGGTAGGAATGCCTCTGTTTAAACTTACTGGTTTGTTTGTTTGATTGTTTGTTTTTGGTTTTGTTTTGTTTTTTTTAACCTTAGATCATCTTATGGGGAAGTTGTAATTAAATATAAATAAAGTTATATTTATCAATTCATCTTGCTACAAACTAGGAATTACACTATAAACCTTTAGGAGAGTCTCAGTGTAACAGGTTACACTATGGAAATGCCTGTGCGTATTATAATCAATTGCAAATCTGCAATAGATAAGAACTTCTCTGTTCACTGGCTGGAGTTCTCAATGCCTTGAAGATTTGAAACATTTTCCTTATATCCTGATTGTCCACAATATAGTCTGGGGCTGAAAAGCAGTCAGCAATTTAATCTATACTAGCTCTGGGGCAGAAAAACAGTCTATTAAGCAACCTGAATGACTCTTTTTGTCATTGTTATTTTATTTGTATTTCGTGGTGAAAACAAATGAAGATTCCATGTCCATACTTACTAACGAATGTCAATATTTTACAGGGCAGGTTTTGTTTACAAATAGTATGTTTAGGCGGAGATGACTAATCCTACAAACCCGAGGAGAGACTCATCAGGTTACCATACGCCTAGCCCCAAGGACTAGATTACAGCCAGTAGGTGTGTCTGGTGGCCAACCTTGACCTGTCATTTGCATATAAGAGAAGAAGCCGGCCTCCTGCAGCTGGCTCTTGGTTAGGTAGTAGAAACCTAGTCAAGCAGAGTTTGCATGGTTCCCACTCAGAGTTCACAGTCTAACTGGGGTTAATAGATATTAATTAATTATAATACAACAGTAGTCCTAATACGAGGCAAGAATCAGTGTGAGCCTCAGATGGTGTGAAGTTATCTAAAGACTAAGGTCAAGGGACGGTTCCTGACAGAGTGATCCTCGAGCCCAGATCTGAGAAGGAGTTTAAATGAACTCCCCAGACAGCTATGACCACACTGGCATGCCTTGCCCTTGGGCCAGTAGCCAGATAGCTGGCCAACACAAGAGCTGCCAAGCTGCAGTCATAGAAACTCATGGAAACAAGTCACCTGCTGCCCACCACCCTCTGAACGAATGGTGGTACTTCGCTTCTGCCAGGGCTGCACCAGACTCCAGGGAAGGCACTGTGGCCCTTGTGTTCCGTGGCTGTTAAGCCTCAGGATTTTGGAAGCATTAGGTCCAGTGCTGGTGTGAAACAGTGAGCAGGGACCCAGTACCAGTGCAAGCTGGCAGGGCCTTCTCGCAGTGTTCATTGCTTGGACAGTTACTAGCTCTTCCAGAGACATTACTGACTGCCATTCTGTGCAGTCCAGGAGCTGGGGCCCAAACCTTGAGGGTAATCATAAATGATAGTCCCTGGGGGGCTGCAGCCCATTTCCACAGTGCATTGCCACAGGCTAGCCCCTTTCGTAGGAATCTAGCCTGAGATGGTCAGGGTGAGTCCTTCCTCTTAAAACAGTAAACACAAGCCTTTGGCAGGGAGGAGTCGTGAGCTTTGGGGGTCCCTTTTGCTGTGACTGCTGTTTATCCCTAGGGAAAACTTACTGTGCCGTGACAAGGTTAAAAGAGCAGGCAGTCATTTGGGATGTTAATGACTTCTTATTTATTTATTTATTTATTTATTTATTTATGAGCTGCTTATTATACTTATCAAAAAAAAAAACGATCTCAGCATTTTACACTCTTCCTTCATATAATCGTCTAAATGAAAGTGAAAGTACTGAATTATCATATGTAATGAAAGAAAAAGGAAATAAGAGAATCTATGCTGATATGTATGTTAGGTGTCGTATGAACTATGCCAAGGGGTCCTTCCCTATGTTTCCATGAGCTAGTGGATAAAATTAAAGTATGGATAGAAGACTTTTTTTTTAAAGATTAAAAAGTGGGCTGTTGAGATGGCTCAGTGGGTAAGAGCACTGACTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCACCCGTAATGAGATCTGATGCCCTCTTCTGGTGCGTCTGAAGACAACTACAGTGTACTTACGTATAATAATAAAATAAATCTTTTTTAAAAAAGATTAAAAAGTATTTGATGGGTGGACCATTTTAAATATCAGTGGCTCCATTTAATTAAACAAATACAGTTAACTTTTACTCCCATTACCCTCTTAGGAAGTTATTGTGTCAAGCCAGTCAAAGCTTCCTGAAAATTATACAACAGATTTTTTTTAATGTGTGACGTGCCCATTTTTTAACTGTGCCCGACATGACTAGCATGTATGTATCATTGAAACACATTGTTATGGTTATAAATATAAATAATGCACTTCCTACTGGCTCTATAGCATATGTTTCAACAGCTAAATTTAAACATATTCAATACTAAATTTTGACCTCTATGCACCGTTCAATTCTGGGGTACAGGGTACCTTTGTAAATCCACTTGGTTACCATAAATCCTCATGTTCTCCTCCCTGTACTAACTGCCATTCTCCCAGATCCAACTAAATGTTCATCTTCTTAACTTTCTAGAAACCCGCCTCTCAGCTCTCCTTCTCCATGGTTTTATGTTTCCAGCCTTTCTGTGATTATTTTTCCCTCTCTTTCTGTCCCTCCTCCTGAAG
Seq C2 exon
CCATGTCCCTGAACCTGAGGATTATGGGTGCTCGCCCGATGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037685-Atp8a1:NM_001038999:14
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.188
Domain overlap (PFAM):
C1:
PF127102=HAD=PU(40.6=86.7)
A:
NA
C2:
PF127102=HAD=FE(23.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: