HsaINT0027406 @ hg19
Intron Retention
Gene
ENSG00000162949 | CAPN13
Description
calpain 13 [Source:HGNC Symbol;Acc:16663]
Coordinates
chr2:30945638-30953652:-
Coord C1 exon
chr2:30953596-30953652
Coord A exon
chr2:30946103-30953595
Coord C2 exon
chr2:30945638-30946102
Length
7493 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
ACCCCCGTGTCTTTCTCTAGGAC
3' ss Score
12.68
Exon sequences
Seq C1 exon
TGGATGAGCCTGGTCATGTACAACTGAAGCAAAGAGGAAAGCAGACCCATGGCTCAG
Seq A exon
GTAAGACATGGTAGCTTTGGAGTCTTTCCCTCCTGGGAGCATGAGTCCTCCTTCCCCTCTAAGAACTGCACATAAGACTCTCTCCTTGGGAGAGCCTCCCCAGGGATGACAGACCCTTACATAAGTGAACCAAGGCTTAGCTGCTCAAGGCCCTTGAGTTTCAAGGCCAATGCTGCAGATTTCATGCAGACAATGTAGACCAATGGACCTTTATGGAAAGGCATGGCTTGAAAGGCATGAATGAGGGTTTAGAATCCTTCACTGCAGTTCGAAAGAAAAAAAGTATCTCTCATCACGGGAAGGGCAAGAGAAATGGTGGAAATGGAATGGTGTAGAGCAACAGAAATGGTAGAAATGGTCAGGCCTTAGGGAGAGAAGAGCGGGCTCTAGCCCCAGCTGTACCATTGTCTCACTGTGCAGCTTTGGACAGATGATGAACATCTGTAGGCATCAGTGTTTATCCCTCTAGCATGAGTGTGCTGAAGAATTAACACTCACGTCATTTCCTCTACATTTTTTTTCATGAAACAGACCCTAGAGTTACATAGTCCACACCCTAACCCTGCTGTAGCAGAAGCCCCATCAGTCTTCTAGAATTCTTTAGGACAGGGGAGCTCAAGATGTTGTGGTTCCCATTGTTGGACATCTCCGAGTGTTAGGTATTCCTTAGCTAGAGGCAATCATCTACTTCCCTGAAACTTTCTACTCATGCTTCTGGCTCTACTCTCTGGACCACTGTAGAAAAAAATACTGGACATGCAAGACCTACAAATATTTGAGGATACCTTTGCTATTTTGCCCAAAGCCTGTCTTCTTTAATTATTCATGTTGGTTTTCATCCAGACCTCCTGGTGACCATTCTCTATGTGCCAATATACCTTCGAAGTATACAGTTCTTCACGCAGCCGACCTGTGATCAATATCACCTAAAACTCGATTGTTTTGGTAAACAGTATTTAATCTCCCATTCATGTACCTTGAAGTCAAGAGACAGACACTGTCTCCATAAATAATGTTGTAGCATAAATATTTCCTGATGAACGCTTGATGCTTTCTAATGATCGCAAATGAATACTGCAGAGATCATAGTTAATTTGACCCAATCATATTTCCTTGAGTTCTCCTTTCACTCCTTTTTAAAAACAGAACATTTGATTATTTTCAGTTTTATTGTGTCTGTTCCAATCTGCATGACTTCTAATATCAAAAATGATTCTTCAATTGTATATTTAAGCTAATTTGATACACAGGGCCTAAAGGCTTAAACTTTCAAAGTAACTGGATTCTCTCTTACTACCTTTTCTCCGTACAGGGTCGCGATTCCCTCTTAACTAATGTTTCCACCCTTCCTATTTTTAAACAATGTGTCAGAAGGAAGGATAATATTAGAGGCATTGTCGTGTTTACTTCAGTTTCTTTCACTAATGCCTATCATCAGCCACAGGAGCGCTTCCCTAGCTTCCTCATTAATCACCACCCTCTGGTATCACATCATTAAAGCACTTCCACTCACTCTTGGCTTGTGGTTTGCTTTACAGAATTGGAGGCAGGAGGGTGAAGAAGTTCTGCCTGCAAATCTACAAACCCACCTTCCTCTGTAACTATCTCCCCACTTCTTCCTCATTATCCTTCACCTTCTCAAGGGCCTGATTGAATGAATTCTCTCTTCTGTCTTCTGAATACTAAACCTGTCTCTGTCTTCTGGAGTCATTTAACTCCCATTTAAAAATGTGTATCTTTTAAATTTCTTCATCTCCTACCCCTTCCAGCTAAACTCCACCTGTTTCCTCTCATTGCAACCAAATTTCATGGAAGAGCTCATTGTCTACATATTCTCACTTCCCACTCTCCCTGCTAACTGCTTCAGTTGAGATTTCTTTGACATCATCTCTCTCCCTGACTTTGGCATGGCCTCCCTATCTGATTTTCCTATATCTACTCATATCCCTCAAATCAATTTCCGGCAGCTGGACTACACTTTTTAAAATTCAAATCCAATCATTACATTCTCCAGGCTTAAAAACGCTTCAATGTCCTCCCATTGCTCACAGGAAAAATCTGGCATCATTAACATGGACCACAGGAGCCTGTCTCCTCTGGACCCTGCCCACCATCTAACCACAACTTGTCCCTCTTTTTCCTGCTCTCTACTCCAACCACACCATTACACCTTTACTTCCTTCTATTTTCCATGCTTTTCCCAGCCTGAAGCCTTTGGCCTTACTGTCTGCTCTGTCTTGGCTGTCAGTCACCAAACTCCTGATCCTTTATGTCTTAGCCCAGTTGGGTTCCCATATTATGGGTTCCCATATTATTCACTCACATATCACCCCTCCCCAGTCATAACATTCAACACACTTGGTTGTAGCCCATCTTCTTTTAAAGAAATATATTGAGATATAATTCACACATTGTAGAGTTTGCTCATTTAAAGTATAGAGTTCAATGGTTTTTAGCGTAGTCAGAGGTGTGCAACAATCACCACAATATGATTGTTAGAACATTTTTATCACCACAAAAAAGAAACCCCATGCCCATCTAGCATGCCCACAGCAGTTGCTCCCCAATTGTGTCCCACCCTCTAGCCTGAGGCAACCACTAATCTACTTTCTGAATCTGTAAGTTTGCCTATTCTGGACATTTCATATGATTAGATTCATACAACATGTGGTCCTTTATGACTGGCTTCTTTCACTTAGCGTAATGCTGTCAGGATTCATCCATGTTGTAGCGTGTATCAGTACTTCATTCCTTTTAAGTGCCATATAATATTTCATTGTGGCTTTACCCCATTTTTTTCATCTATTCCTCAGTTGATAGACATGTGGGTTGTTTCTAGTTTTGACTGTCATTAATAATCCTGCTATGAATGTTTGTGCACAGGTTTTTGGGGGGACATATGTTTTTATTTCAATTGGGTGTATAGTTATGAGTGGAACTGCTGGATCATACGGAAATTCTATTTGTAAATTTTTGAGGAACCACCAAACTGTTTTCCAAAGCAGCTACACCATTTTACATTCCCACCAGCTGCAAATGAGAATTCCATTTTCTCCACATCCTCAGCAACCCTTGTCATTGTCTGTCTTTTATAGCAATCCTAGGGAGTGTGAAGTGATATCTCACTGTGGTTTTGATTTGCATTTTCATGATGACTAATGATTTTGAGCATCTTTTCAGTGCTTGTGGGTTATTTTATATCTTCGGCGAAATGTTCATTTAGTTCTTTGTCCATTTTTAAGCTGGGTTACTTATATTTTTACTACAGAGGAGTTATAGATGTTCTTTGTATATTGTAGATACGAATTCCTTATATATGTGATTTGCAAAATTTTTCTCCCCTTCTGCAGGTTGTCTTTGCAGTTTTTGATGCCATCATCTGTAGCATATGAGTCTTTAATTTTGATGGAGTCTAATTTATCTATTGTTTTCTTTTGTCACATATTTTTGGTGGTATAGCTGAGAAATCATTGCCCAACCCAAGGTCAAACTATTTATTCTGTTTTATAGTTTAGCTCTTACATTTAGGTCTTTGATCCATTTTGAGATCATTTTTTATATGGTGTGAAGTAACGTTCTAATTTCATTCTTTTGCATTCATTCATTTGTCCCAGCACCAGTTGCTGAAAAAACTATTCATTCTCCTGTTTCTTTGTCTTGGAACCCTTTTCAAAAATCAATTTAATATAAGAATGTATTTATGGACGTTCCTTTCTGTTCAATTGATTTATGTGTGTATCTTATGCCAGTATCACACTTTGTTGATTGCTACAATTTTATAGTAACTTTTGAAATTAGGAAGTGTGAGTTTTCCAACTTTATTTTACTTTTCAAGACTATTTTGGCTCTTCTGGGTTCCTTGCATTTACATATAAATTTTAGAATCAATTTATCAGCTTCTGGGATTTTGATAGAGATTACATTAAATCTAAAGGTCAATCTGGGGAATATTGCCATCTTCACAATATAAAATCTTTTGTTCCATGCGTCTCTTCATTTTTCTATATCTTCTTTAATTTTTTTGAACAATGATTTACAGTTTTCAGTGTAGAAGTCTTACACTTTCCTTGTTAAATTTATTCCTAACTATTGTAGTTTGGGATGCAATTTTAAATAAAATTGTTAATATTATTTTCAGATTTTCATTGCTAGTGTACAGCAATAAAAATTATTTTTATATTGATCTTATATCCTGCAACCTTGCTAAACTTGTTTATTAGTTCCAATATTTTTAAAGGGCTTCCTTAGAATTTTATATATTCAAAAGTCATGTAATCTGCAATAAAGTTTTATTTTTCCACTCCAATATAGAGGCTTTTTATTTCTTTTTCTTGCCTAATTGTCTGGCTAGAACCTCTAATACAATGCCGAATAGAAGTGTACAAAGCAGACAACCTTGTGTTCCTGATCTTGGGGGAAAACACCCAATCCTTTGCCATTAAATATGATGATCACTGTGAGTTTTTCATAGATACCATTTGCCAGGTTGAGGAAGTTCACTTCTATTTGTAGCTGGCTGAGTTAACACACTTTTCATTACTTGCTTGATGTCAGTATTCTCTGCTAGACTATAAGCCTGGGTATGTCTTGTTTGTTGCTATTTCCTTAGCACAAAGCGAAACACCTACCCTGGAGAAACTAGTTGGTAACTTTCTCCCAAATAACCGAAATAAATCATTCTTTCAGGTTTATACCTTCCTTTGTTTTGTTCTCATCCTAGCATTTGTTAGTATTAGCTTACATCCTAGTCTTCCTGCTATTTTAGCTATTCTCTATTTTCTTCCCCTTTGGTGTACTGGAAGGCAGGTAGTTAATATTATCTTGTTATTATCTCTAATACATCATGACCCATATTATCTTATGAAGGCCTATTTTTCCCTCACTTTTTTGAAAAATTTGAAAATTTCCCTCACTTTTTTGAAAAAGTTGAAAGTGTCCTGGTCACTTCAACTCTATCCAATATTCCCTTACTTTGCTATTACAAAGTTTCTTCTAGGAGTTCCAACACTCTGAGGTCAGCAAAGAGACTTTTATCGTTAGCCAGGATTCGATCCAGAGAAGTCCCTCTCCTTGCTCACTTGATCCTCCGTGTTACAAAGTGTCCCTGGAGCGAGCAAAGTCTTTGTCCTGAGTTAAGCGAGCTTCTCCCAGAGATGAGGGTTATTGGAGCTCCATCACCAGTCTACTTGGTTTCCAGGTCACTCCCTACAAAACTGTGTACAAGAGGTCTTTTATCTGCCCTTGGACTCACCGGGCAAGTTGAGGTATACTTTTGTTGTAAGAATACTTCTGTTCCTCTCTCTGGCTCATCTTCAACCCATCTGCTCTCCTCTGACCTAGCAGATTGGGATATAGGTATATGCAACTGGGATGAACTCCTCTTCCTCTCTTCCCATCATATATATTTCTTTTAAACAAAGTGTATGCCTTGTTGTCACATTGCAGGCAATACCTATGTTAAAATATGTTAAAATATGTTTAAATATAAAGTTCATACTTGAAAGAATGCTAACACTTAACTCATTGCTCTGTGCTCCTTGGACACTTGAGGCTGTATTGATTTTAATTGATTTCAGAGTCTAGAGGTTTAATACACGGCAAATCACACCCTGCTGAGAGTTTGTCTAGCTAATGTCATCTACATCCATGTTGATCTATCAATATGCCAGTAAAATGCCTTATTCTAACAAAATTGTCATTTATAACAATTTCCCACTGTATAAAAATACAGTTTCTTGAGGAAAGGGCCACCTTCTCCTATTCTGCAGGATTTAGGTGAAATATGACAACAGTGGCCCTGGTCTTACTGAGACCAACAACCATTTTCTGCAGGATGAGTCTACTTCTAGCCCAGTAAATCCATCTCTCCAATCTCATTCTGTTCATCAAAAGAAATTCTTTTCGAGAGACCTGGCTAGATGTTCGGTTGAAGACTGACACCCCAGGGCAGATGGAACTGTCAGAGTTCAAGTTAAACTCTCCTATACTTCTGAGTTGAGAGTTGTGAGTCTGGATGTGCCTCTGGTGATGTGAAAACACTCAACACCATTGGCAAGCATACACCTGGTGGTTACCAGGCACCTTGAGATGCCAGGGTGTCCAGCCTTCTGGAGCTGGCTTTGGAAGAAAAATGTATCCAACTGGGAAACCGACATGTACACTCCAAGGGCATAAACCAAGGAGGAGGAAGAGTTGGAATCCGGGAAACAGAAGATCCAACACTAGACAGAGACAGGGAAGTCCAAGGACCAGCGCTATGCAGCAGAGCAAGAGAGTGAGCCATTCCGAGAGGAGCTGGAGGGGTGGCCTTTGGGGAAAATGGGAGCAATTTTTGATCAGATTGCTTAATTATAGAAAAAATAATGTTCAGAGGGATTTTGAAATTCTGCTGGAGAGCTTTGGAAGAATTAGTAGGATAATGACTTAAACTAAGCAGACAAAAAAGTGAGGTAGTTATTAACTCCTGGAAGAATAAAGAGTTACAGAAGAGAGAAAATGTGATCCTAGAGTATTTTTTCACTCAGCAGTGAACAGTACATATATAATTGTAATAAAATACAAATGGAATATTGATTTAACAAAAATGTGACATAAATATATCAGAAGGAGGGAAGATGTAGACATGAAAGGGGGTTAGAAGCAACCCCACCCCATCTTGCATCATAAGAAGTCAATAGGCATTTAAAATTGACAAATCAAGAATTAACTGCATAAGCACATTACCTAGAAATATGGAGGTAAACATCAGAAGAAAGAGTTTAGGGAGGGGAATTTGGATAGAAATGGGACAAGAACCTGCTATTTTTCCTTCGTGCCTTGTAGTACTCTTTGAATTTTCTAACCATGTATCTTGGACTGAGTTTTCATGGAAAAAAAAATAGGCAAACTAGCAAGTAGTCTGAGAGACAAGAGAGGTGGAGGGAGGCAGGGAAGAAGAGTTGAGGCCTCTTTACCCCATGGGTAGGGCAGCTGGCTGATTATTGCAGAAAACATGACTATGCACGAATGTCACTTTATTCCAAGCCCCCTGCACTTGAGAAAAACCACTCCTCTGCAGAAGTCCAAAGCTAGCCATCTGGAGCTTGGATGGGACAGAGCTCAGGGCTGTTGTTACTATAGCAGCCCCTGGCCTCAGCCCTTCTAACCTGCCTGGAGATGGGAGGAACATCTCTCCCCCAAGTTTCCCTCCACTCCAGTGCCAGCCCTCAAGGTGCTAAAATGGGCTATGATATGAACTCAAGCTTGGGGCAGGACAGGTGGGGGGGTGCCCTTTAAGGAATTTTGAAGAATGGGGTAGGGTCATCCATTAAGGGGCCATGGGCACGTTGGGGTCTGTCAGCCTTGCCAGCAGGAAGTGCCAGTGCTTCCTTTACTGTGGGATGATCCAGAACAGCATCTTTGGAATGGGGCCCCACTTCCATGGTCACTCAAAGGAAGGAGTTTCTTTACTCACCCTTGGCCCTCTGCATTTGCACCCCCGTGTCTTTCTCTAG
Seq C2 exon
GACAAGCTCCCAGTGATCACTCAAGAATCTGGCTCTCATTCTAAGAGGCTGTGCTGCCCAGTATGGTGGTTGTGATAAATCTAAACCAGCCCTGCATGAAACAGAGTCCAAGCTGTCTCCCAACAGCCTGGGTTCGGTCCTTGGCTGGCCCAGGCCCAGTTAAGCCTGTGGCCACCAAGCAGCTCATCTGAGCACTTTGGGATGTATTCAGCCTACGTTGCCCTGGAAAAGGAAGCAGGAGATGTCTCCCTGTGGGAAAGGAGAAGAGAAGTTGTCTCTGAGTCCCCTGTCACCAGTTGGATTCATTTCTTGGAAGAGCCAGAATGAGCCACTTTGACCACCCTCGGGTGCTATGGGTGACACAAGAGCTGTCCACTGGGTGTTTGCAGAATAATTACACTATCTTATGTCTGGATCCTGATGATTTCACAGCTAAATGGCAAAAATAAAACATGTTTCCCATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162949-CAPN13:NM_144575:22
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)