RnoINT0029017 @ rn6
Intron Retention
Gene
ENSRNOG00000032375 | Capn13
Description
calpain 13 [Source:RGD Symbol;Acc:1562682]
Coordinates
chr6:24579622-24588257:-
Coord C1 exon
chr6:24588199-24588257
Coord A exon
chr6:24580054-24588198
Coord C2 exon
chr6:24579622-24580053
Length
8145 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TCTGTGTCTTTCTTCGCTAGGAC
3' ss Score
10.76
Exon sequences
Seq C1 exon
TGGATGAAGCTGGTCATGTACAGCTAAAGTGTGAAATGCAGCAGAGCCCTCTGGACCAG
Seq A exon
GTAAGACACAACAGCATTAGCGTCCTTTGTCCTTCCTGTGAACATTTCCCCACTTTCTGTAAGAATGGCATAAGACTCCCTGGAAACAGCCGCTCAGAGACTTCAGAAAGTGTATCTTTAGGAGCCAAGGCCTCGTTGATCCTTGCTCCCGAGTTTCAAGGCCAAATGCTGAGATTTCGTCCAGACACGTTCATGAAGAGAGCAGTCTGAGAGTTGTGAATGAGAAATTTACAACATGTAATTAATGTTCCGGGTGATGACTCACTCCAGACAGACTAGAAATGGTGAGAATAGAATATGATGAAACAACATGAGCTGTTGACCTTGGGGGAAAGGAGAGCCAGCCACCGCAGCTCTACCGCTGCGTCGCTGGCTTTGGGCAGTGGTAGAAATGCGTAATTATCAGCACCTATACTGCCGGCCTGTGCTCAGCAACAAACACATTGCCATTCCCTCTTTGACCTTTATGGGACACACCAGAGTTACTGTCTACTGTCTACACCAGAACGTCTACTGTCACAGTGCCCAGTCCTGCTATAGCAGAAATTATGGCTGAGTGTTCTAGAATCTGAGGAGCTTGTGAGTTTGTGCCCCTGCTGTCTGGGAATCTTCACGTGCTATGTATCCCTTATGTTAAAAACAAGCATACAGTGCCCTGGAAATTTCTATCCATGTGTCCATAGAAATTCTACTCCCTGGACCTCTGCAGAAAAGGGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGGCTAGACATGCCAGAACCTGAGATCCTTGAAGACATTTCCTTTGACTGACCCAAAGTCTCTGTTCTTCAGTTATCACTGTTGGTTCTCCATTCGACAATCCTGTGATTAATACCCTCTCTGTTAGTTACTTGTTCCTATGACAAAATGCCTGACAGCAGCGATTTTCAGAAGGGAAGGTTCATTTCTGCTCATAGTTGAAAAAAAAAAGGTGACAGTGTATGGAGGCAGGGGAAGTGTGGTGGCAGGGTAGCTGGTGCTTTGCATCCATAGTGAGGAAGCAGGGAAAGAGGAGCACTCATAGTCACCTGGCTTTCTTCTTCCCCCGCCCTTTTCCCAGGATGGTATCCCCCAACACATCCAGAACACGTCTTACCACCTCTTTCAGTACTCTCTCGCAGACACACCCAAAAGTGCACCCCGCTAATCCCATAGGTGTGTCTTACTCCAATCAAGTCGATCATCAGAATTCACCACCACACCCTCTGAAGTTCTGTTACTTCTGTAAATAGTACTTGATAATTTATGAATCATGTTGAAACTAGGAGAAGGGTACTCTGCATAAAGATGTAAGATGTAGTATTTAAGCATCAATACTTCCTGATGAACATTTGATGGTTGCTAGTGATTGCAAATCGACAAGAGTCATTTTTACTCAACTGTATTGAATTTCCCTTTCACTCCTTAAAGGAGGATCATTTCCAATTTTATTGTGCCTAGCACAATCTGTATATCTTTAATGTAAAGAATGACTCTTTAGTTTTCTCTTGAAGCTAATTTGGCTGACAGGATCTACACTTTTGAAACTTTAAGGTCACTGGATTGTCTCTCTTTACTGACTTTTTTTTTTCAGTCTCCTGTTCTGAAGGCTGAAGGGGGAACTATAAGTCACATAGGTGTTTTATATGTATTTATCTCTCTCGTTAACGCTGACATTACCCCAACAGTGTTCCGTCTTCCTTGCTTTGTCACTCTTTGACATCATAATGTTGTACGTGTCCCTTCACACATGGCTCAGGAGTTGCACTGAGGAACTAGGGACAGGAAGATGAAGGCATTCTGCTTGAAAATGTACAACCCCTCCTGCTTTGGTAACATCCCTCCTTCTCTCAAGTTCTGCTACACAGCATTTCCCTCTGGGGGTGTCCTGTATCCACTTTTGCAGGGGCCCGATCGAATGAACTCCCTCCTCTACCTTCTGAATGCTAACGCCTCCCTCGGCTTCTCTGTGCCTCATTCACGTACGTGTATCTTTTGAATTTCTCCCAGCTCACAATCCCTTCCAGCTACTGCTGCCTCTCTCCTCTCTACCCATTACAGCCAAATCTCATGTAGGAATTAACTATCTCCACGTCCTCACTTCCTACCCTCTCTTCAAACCACTTCAATTTGGATTTCTTAGAAATCATCTGTCTCCCTGAATTTCACATTGGCTTTTGATCTTATTGTTCTGTATCCATTCACATCCTTCAAATCAATTTCCTGTATCCAGAGCTACGCTCTTAAAAATTCAAACCCATTTACTGCATTCCAGGTTAAAAACCCTTCAACATCTCCCCCTCTTCCTGTCCAAGGCAAGTCTAGAGCCCTTAACGTCAGTCCCTGGGGCCTGGACCATCTGCCTCTGCCCATCCATCTGACCACTCCTTGTTCCTTCATCTACCTCCACCATACCTGGGTAATTCATTACCATCCATGCCATTATTCCTAGCCTTGGCTCTCAGACATTGCTGTCTGATCTATCCTGGGTTCTAGTAGCCCAACACTTGCCCTTCCTTGCTGTAGCCCAACTGGCAGCTTGCGTAAAGTTTCTCACATACCCTTTCCCCCAGTTATAAAACTCATCCCGTAGATTTCTTGTTGCCAATTTCTTTCTCTCATCGTTAGTGAGGTCTATTGAAATGCAATTCACAGTGGGCGGTTTACACACTTAAAGTATGGCGTCCAAGCTGGGCATGGGGGTGCACACCTAGAGAACTTAGAGCGCAGGAAGCAGAGGCAGGATGATCACAATTTCCAATCCAGCCTAGGCTACATTGTGAGTTCCAGGGCAGCTACATGAGGACACACACACACACACACACACACAATCATGTTGTATTTGTGGTTTTAGTATAACTGTAGGCCTGCACTTATCCCATTCCTTTTGTTATAGGTTATCCCAATAATATAATTTTAGAGCATTTTCGTCTGCATATAAAGAAACTTCCCACTCCCCTGGCAGTCACTCCCCAGCCGCATCTTCAGTCTTAGGCAAGTGCTAATCTACTTTCCCGCTCAGCAGATTTGCCTGTTCTGGGTGTTGCATTGTGTGAGGAGTGGAATCCAGGAATGGCCCTTAGTAACCTTGTCTTTCACTAAGCAAAATGTTTTCAGGGCTCGCCCACGTTAATTCTTCATTCCATTTTAATTCCAAGAATATTTCACTGATGCTACACACCATATTTGATCCAACAACCAGTAGATGTTGCATTATCTCTGCTTCACGGCTAGCGTTAATATTCATACCGTGAGTGTTTGTGGGTGAGCGTTGAGATGGACGTATGTTTTCACTTCACTTGGTTACACAGCTAGGGATGTTACACACTTCACTTGGTCACACAGCCTAGTGGATCACATGGTAACTCTGAGTGACATTTTGAGACGCTGCTTGCCTTTCGTATCTTCCTACCAATGATGAATGGGAGTTTGAACAGCACTTGGTGATCTTTGCCTCTGAGGGTTTGAACTGGTACCTCACTGTGGGTTTGATTGGCACTTCCTGGATATCAAATGATGCTGAGCCTCTTTTCCATTGGTTATGGGCTACTTGTATGTTTTCTTTAGAGAATTCTACTCAAATCCCTTCTGCATTTTGAAACTGAGTTATGTATATTTTAGTATCTTCTCGTTACTGAGCTCTAAGAGTTATTTTCATATTTTAATTACTAACCTTTATCGTGTTATTTGCCAATTTTTCTCCTGTTCTTTAGCTTGTCTTCTCAATTTTTTTACAGAAAATTTATTTAATTTTCAATTAAAACGGTTTCCATATATTTTATCACATTTTCCCCTCCCCCAGCTCCTCCCAGATCTTCCCCCTACCCCCTGCTTTGCGTTTCTTGTGAGGATTTTATTTTGTTTTTATCTTTTTGATTTTGGGTGGTATCATTTGAAGTTCATGGGCTTCTAAGTCCGATGAGGTCTGCGATGTCTATTTTTCTTTATCTATACTTTGGATGGTAGAACTCAAGGGTCACTGTCCAGCCTTGGGTCACAAATGTTTACTTCTGCTTCTCGAGGAACACGCTGTTAATGGCAATTTAGCTTTTGTCCTTTAGACTTTAGAACTACTGTGAGGGTTTCTTTGTTCAGTTGGCTTTTTTGCCTGTGCAAAGCAGGAGTCTAGTTTTATTCCTTCACATGTGGACATGTCTGGTCTTCTCTGCACCCATTTAAAGATATAAATTGTAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGTCTAGCAAGCGCAAGGCCCTGGGTTTGGTCCCCAGCTCCGGAAAAAAAAGAAAAAAGAAAAAAAAAAGATATAAATTGTATCTGAAAGTAGTTTTATTTTCTATTTTCCAAATTGTATCCACTTATCACTTTGGGTTTTTGTCTTGGTTTGGTTTGGTTTGGTTTGGTTTGGGGTTTGGGGTTTTTACCCTTCTTCAGTGACCCTGGATAGGGTTCTACTATAGTTCTGAACCGATATTTAAAAAGCAAACAAAGAGAAATAAACAGACAGACAGAGAGACAGACAGACAGACAGATATTCTTATGTTCCTGATCTTGGCAAAGATGACTAGTCTTTCACTAATCCATATGATGTTAAATTTGAAGGTTTCTCTTTTTAGGGGGCGGAGTGCAGTGCTTTTAGTGTTACAACAAATACCGATTAGTGTTGTCCCAATTTTACAATTGAGAAAGTTGCTCAGCTTGCAAGGCTGGCTAAGAGTGAGGTTGAGGTTTAAAAACTAGGTCTGTGACGTCCGTATTTTTCTATGGCGCTTTTCCAGCTGTGATTCACAGTGGTTGATTATACTGTGTTCGTGTCTACTCTTCAGAAAGCATTACATGCAAATTTCACTCAGAAATGAGTATGTCCAAGACCATGCACACTTTCGTGAATTTTTTCTTCTCTTTTTATTGTTTGAGAATTTCATGCATGTATATAATGTATTTTGATCAAATCTACCTCCCATTGCCTCTCCTATAATCCCTCCCCAGGCCTCCCCAAAAGTCTGCTTAGTGCTGTCAATGTGTGTTTGGGTATAGGACCATCTACCGGAACCTGAATGGCCTCCCGGGGAGCATGTCTCTGAAGAAAACAGACTCTGTCTCGCTCTCCCAGCAGTCTGAGAGAGTCTCTCTCTCACCACTTGCCAATAGCTTCTTAACTAGAGGTGGTACTTTGTGATGACTCCATGTTGGGATTTGTCTGCCTTGACCTTGCCCAGGTCTTGGGCATACCATCACAACTGCTCTGGGTTCACATACACAGCTTCCCTGTCGTGTTTAGAAACTGGTGTTTCAGAAAAGCTCTCTGCCCGCTCTGTGTTTTACATTCTTTCTGCCCTCTTGTCTGAGGTGACCCCCGTGCCTTGGAGGGAGGGTCTGTGATACAGATGCCCCATTTAACCTTGAGTTTTTAATTAATACCATCCATCAGGTTATGGAACCTCCTCTCTGCTTGTAGGTGCCTAATACTCTTTTAGCTGCTTGCTTAATGACGCCATCTCCTGCTAGATGCTAAGACTGGATCTGTCTTTTTTGTTTCCACCTTAGCACAAAGTAAAACGTTGGCATTCAGTAACCATTTCCCAGGTGGCAGAAGAAATTGTGCATTCGTTCGTAAATTTTATTTTAATTAAAACATAATTACATCACTTCCCTACCTCTTTTTCCTCCCTCTAATCTCTCCCTTGTCCCACTCAAATGTACGGCTTCTTCTTTTATTATAATTACATATATGTGTGCATACATAAATGCACAAATATATAACCACAACCTACTGAGTGTTGAGTATTGCTTGTGAGTGTATGAGTCCAGGTATAACCAATCAGGGGGCTCATCTATAGAGGAGAACAATTCTCCCTTTCTCAGCAGTCATTAGTTGTCCTGTGTCTAGATGTAGGACCCTGTAAAGTTTCCCCTTCCGTGCTAGCATGTCAATCGGTATTGTCACTGTTCTGGTCTTGAGTCCACCATATTGTTTCTGGAATAATCAAAGGACGTGTCACTGTCACATTTGCTCCATGAGCTTCTTCCCCAGAGAAAGAAGTGAGGGAGCCATTGTCCAGCCAGTCTATTTCTGGGTCACGTTCTGTAAATTATACAAGAAGCCTTTCATGTACCCTAGACTTGCTGAGAGCTCGGCTTGTACTACCATTGACAGATGCTAGAATTGTGTTTTCCTCTATTTCTGCCTCATCTTCCACCCCCAACCCCTGCTCACCTCTGACTTAGCTCAGCCAGGTTGGTCAACTCTTCTACCCCATCCTCCAACCTGTTTGCTTAGAAGAAGGCATGTACTTCCGCTGCCACGTTGCAGACGATGGTTTTGTTCAAAGATCAAGTTAGAAGGTGCTGGGAGTACTGGAACAGGTGAAGCAAGGTGATCTTAACTGACTTCAGAGTACACTGTGGATCACATCTTATTGAAAGCTTGTTCAGCTAATGCCATCTGCATCCACGCTGGCTTGCTGACAATACGGCAGTTGACTGCCTTCTAACAAAGGTGCATCTCTATGAATTTCAGGCCAGACTAGTCTTGAAGTGACCTGTCCAGCCAGGACAGCAAGGGCTACACAGAGAAACCCCCCATCTTGAAAAACAAAGAACAAAAAAAAATAACGTAAAAGAGTCGAGAGTCTGGATTTGCAGCTGGAAACATGAAAGTTTCTAGATCCCAGTAGAAACCACAGCCGACAGAAGATTGGAGTCCAGCTTTCTGAGCTGGCTTTGAAGAGAAACGTATTCAATTAGGAAAGTAAATTCATAATCTGACAGCATGATCGGAGGGTGGGGGTGGGAATCCAGATGCATGGGACCCACCAGTGGAAAAGCACAGCTATCAAAGCTAGACACTGTGCAGAGGGCAACCATTCTTAGGGTAGCAGAAGGGTGAGCTGAAGGAAGGAGGAATCAATACAGTTCCTTGGGTGGCTTCATCGTGCAGAAAGCTTTGAAATTCTGCTGGAGACTTTTGTAAGAATTATTAAGATAATGACAGATAATGCAGACAAAAAATGAGGTAATTAGTAACTCCTGAAAGAACAAAAAGTTACAGAAGAAAGGAAATGCAATTCAAGAGTGTTTCCTCACTCCGCAGTGCACAGTACATATATAATTGTAATAAAGTAGAAATTAAATATTGATTTAACAAAAAGTGTGATATAAATATATTAGAAGGATGAGGAGAGAGACGATAGAGACATAAAAGTGGGCAAGGAACACCCAGCCCCGTCGTCCATCACAGAAATCGATGGGCATTTAAAATTGGCAAGTGAGAGAGCTGCTGTCTAAGGCTGCCATTTAGAAATGTGGGTTGAAGCTTCCAAAGCAAGCCTGAAAAGGACAGGGGACAGGAAGGATGTAGCGATCTGCCCCTTTCCCTTCACGGCTTGTAGTAACAATTGGGTTTTCAAATTGTGTGTGTGCTAGATTGAATTCTTACTAGAAAATAAATATAACAGGCAGGGAAAACCCTAAACGTAAAACACTTAAGCCTTGGAAGAAGAGGAGAGTAAATGGAAGGAAAGCCAGGGTCCCTAACCACCATGGGACCTAACCACCATGGGCAAGGACATGTTAGAGTTGCAGGAGAGATAGCTATGCAGGGCTGCCACTTAATTTGAGCCACGTGCACTTGAGAAAAGCCACTCTTCTACAGAAGTCCATGGCCAGCAGACTGGAGCAGGCAGAGGGCAGAGGGCAGAGGGCAGAGGGCAGAGGGCAGAGGGCAGAGGGCAGAGGGCAGAGGGCAGAGGGCAGAGGGCAGAGGGCAGAGGGCAGAGGGCAGAGGGCAGAGGGCTCCATCTGGTTTGCCCAAAACAGGGGCCAACTCCATGATGCTGTTCACACTCCTGCAGACAGGCCAGAGCCAGGTGAGCTGTAGTTTGGATCCCAGCTGCAGGCAGAGGGGAGCAAATAAGGCAGTGTCTTTTGTAGATTTTGAAGATAAGACCATCCCTATCTCCTGGGAGAGCCTGGGAGGGGACCAGTCACTCTCACGGTGGAAATTTCCCGGGGTCATTATTGCATCCACGTAGTTGTAATGGGGCTGGGCCTCCATGGTCACTTGAAGAAAGGAACAAACTTTGCTTTCCCTGGGTCCTTTGCTTATGAAATTCTGTGTCTTTCTTCGCTAG
Seq C2 exon
GACAAGCTCCTGGTGGTCACCCGAGGAAACGGCTTTCTCCGTGGAGTTGTACCAACCCAATGGCAGGTCTGCAGCTAAACCTGGTATTTGAAATGGAGTCAAAGGCGCCTGTGAAGAGCCTGAGTGGAGGTCTTAGCTGAGGCAGGCCCTGGGAAACCCAAGGTCATAGGTCACCAGAGCACTTTCTGACGTCAGTAGGCACTTGCAGGAAAACAAAACAGGAAGTGTCCACTCCCACTCCCGAGAGGAAGCAGGAAGAAACTGGCATTCCATCCCCTCTCACACGATCAATCACTGGATCCATTTATTGTGGAAAAAAAAAAAACAGTCTGATCCAGTTTATGCACCCCCGGGATTGGTCTAATCAGTGTCATTTGCCAAAAATCCACATGCTTTTGTATCTGCACCCAAGTTGTTTCACAGCTAAATGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032375:ENSRNOT00000047853:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]