MmuINT0028722 @ mm9
Intron Retention
Gene
ENSMUSG00000043705 | Capn13
Description
calpain 13 [Source:MGI Symbol;Acc:MGI:2685789]
Coordinates
chr17:73655804-73664662:-
Coord C1 exon
chr17:73664604-73664662
Coord A exon
chr17:73656228-73664603
Coord C2 exon
chr17:73655804-73656227
Length
8376 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GATTCTGTGTCTTTCTCTAGGAC
3' ss Score
11.87
Exon sequences
Seq C1 exon
TGGATGAACCTGGTCATGTACAGCTGAGGGGAGAAACCCAGCAGAGGCCTCTGGACCAG
Seq A exon
GTAAGACATGGCAGCATTAGAGTCCTTTCTCCTCCCTGTGAACATTTCCCCCACTTTCTGTAAGAAGGACACTTGAGATTCCTGGAAATGCCCTCTCTGAGGCTTCAGAAAGTGTATCTTCGGGAGCCGAGGCCCCATTGCTCCTTGCTCCTGAGTTTCAAGGCCAAATGCTCAGATTTCGTCCAGACACGTTCATGAAGAAAGCAGTCCGAAAGTCGTGAAAGCGAAATTTACAACATTTAATTAATGTTCCCGGTGATGACTCATTCCAGACAGAGACTAGAAATGGTGAAAATAGAATACCATGGAGCAACGCGGACGGTTGACCTTGGGGGAAAAAGAGAGCCAGCCGCCAAGCTCTACCACTGCCTTGCTGGCTTTAGGCAGTGGTGGATGTGGATAGTTGTTGGCATGTATACGTCTAGCTTGTGGTTGCCATTCCCTCTTTGACCTTTATGGAATACACCAGGGTTACAGAACATCTACAGTCACATTGCCCAATCCTGCCATAGCAGAAATTCCGGCTGAGTGTTCTAGAATCCTGAAGAGCTTGCGAGTTTGTGCTCCTGCTGTCTGGGAATCTTCGAGTGCTATGTATTCCTTATGTAAAGACAAGCATCTTGTTCACTGGAGATTTCGATCCATCCCTCCATAGAAACTCTCCTCCCTGGGCCTCTGCAGAGAAGAGAGAGACACACAGAGAGAGACAGAAAGAGAAAGATACAGACAGAAACAGAGAGACAGAGATAGAGACAAAGAGGAAGAGAGGCAGAAAGAGAGAGACAGACAGACTAGACATGCCAGAACTTGAGATCCTTGAAGATATTTCTTTTGATTGACCCAAAGTCTCTCTTCTTCAGTTATCACTGTTGGTTCTTCATGCAATGAAGAACTATTGATTCTACTTCTCCTGTGATCAATACCCCCTTTGTTACTTACTTGTTCCTATGACAAAATGCTTGACAGCAGTGACTTACAGAAGGGAAGGTTCATTTCTGCTCATAGTTTGAAAGGACACAGTATATGGAACAGGGAAAGTATGATAGCAAGCCAGCCCGCGCTTTGCATCACAATCAGGAAGCAGAGAAAGAAGAGCTCTCATACTCAACTGGCTTTCTTCTTCTTCCCCCATCCTTTCTGTTCATGATGGGACCCAATTCCTGGGGTAGTCCCCCTCAACACATTCAGAACATGTCTCACCACCTCAGACAGTCTCTCTAGAAATACCCTCACAGACACACCCAAAACTACATCCCATTAATCCCGTAGGTGTGTCTTACTCTAATCAAGTTGATAATCAGAATTCACCAGCACACCCTCTGGAATTCTGTTACTGCTGTAAATAGTACTTGATAATCTATGAATCACGTTGAAACTAGAAGGGTACTCTGCATCAAGATGTAATATTTAAGCATCAGGACTTCCTGATGAACACTTGATGGTTGCTAGTGATTTCAAATCGACAAGCCCATTTTACCCAACTATATTGAATTTCCTTTTCACTCTTTAAAAGAAAGATAATTTCTAATTTTATTGTGCCTATCACAATCTACATACTTTTAATGCAAAGAATGCCTCCTTAGCTATATCTTTAAACTAATTTGGCTGACAGGATCTACATTTTTGAAACTTTAAAGTCACTTGATTGTCTCTATCTTGTCTCTTTTGGGGAGTTCTAATTCTCTTTTTGCTGACTGTTTTTCAGTCTCCTGTTCTGAAAGCTGAAGGAGGAAGTATAATATAAGGCACATATGTATTTCATATGTATTTATCTCTCTCGTTAATGCTGGTCATTACCCCACCTGTGTTCCCTCTTCCTTGCTTTGTCACTCTGACATCATAACATTGCACATGTCCCTTTACACATGGCTTATGAGTTGAACTGAGGAGCTAGGAACAGGAAAATGAAGGCATTATGACTGAAAAGGTACAACCCCACCTGCTTTGGTAACAGCCTTCCTTCTCTGGAGTTTTGCTACACAGCATCTTCCTCTGGGGGTGTCCTGTATCCCATTGCCATCCACCTTTGCAGGGGCTTGATTGAATAAATTCTCTGCTCTACCTTCTGAATGCTAACACTGCCCCCCAGATTTTCTATGCCTCACCCACACATGTGTATCTTTTGAATTTCTCCCACCTCACAATCCCTTCCAGCTACTATTACCCCTCTCTTCTCTTCCCATTACAGCCAAATTTCACATAGTCATTAACTATCTCCACATCCTCACTTCCTACTCTCTCTTCAAACTACTTCAGTTTGGATTTCTTAGAAATCGTCTGTCTCCCTGAATTTGGCATTGGCTTTTGATCTTATTTTTTCTGTATCCATTCACATCCCTCCAATCAATTTTCTGAATCCAATTATGCTCTTAAAAATTCAAATCCATTTACTGCATCCCAAGTTAAAAACCCTTCAACATCTCCCCTTCTTGCTGTACAAGGCAAGTCTAGAGTCATTAATGTCAGTCCCCGGGGCCTGTACCATCTACCCCTGCCCATCCATCTGGTCTCTCCTTGTCCCTTCCTCTACCTTCACCATACCTGGGTAATATCATTACCACCCATGCTATTATTCCTAGCCTCAGATCTCAGGCCATACTGTCTGCTCTATCCTGGTTATTAGTAGCCCAACACTTGTCCTTTCTTGCTGTAGCCCAACTCGCAACTTGCATAAAGTTTCTCACATACCCTTTTCCCAGTTATAAAACTCAACACATAGTTTTCTTGTTACCAGTTCCTTTCTCTCTTTTTTAGTGAGGTTTGTCAAAATGCAATTCACACCATACAGTCTACCCACTTAAAGGATGGAGTCCAAGCTGGGCGCGGGGATTGGGGGTGGGGGGTGGGGGGGTGGGGGGCACACCTAGAGGACTTAGAACACAGGAAGCAAAGGCAGGACAATCACAAGTTCCTATCCAGCCTAGGCTACATTGTGAATTCCAGGCCAGCTACATGATGATACACAGATACACACACACACACACACACACACACACACACACAATCTTGTTTGCATTTGTGATTTTAGTACCATTATAGGCCTCCATTTATTCCATTCCACTTATTGCAGCTCATTCCAATAGTATAATTTTAGAGTATTTTTCTTCTGCATATAAAGTTCTTACTCCCCTGGAAGTCACTCCCCAGCTGCATCCAACCTTTAGCCTCGGGCAAGCACTAATCTACATTCTTGCTCTGTGTAGACTTGCCTCTTCTGCGTGTTGAATCATGTAAGTGGAATCCATGAGTGGCCCTTGGTAACTTTGTCTTTCACTAAGCAAAATGTGTACAGGGTCCTCCAACATGGAAGCATACCATAACTTCTTCACTCCATTTTAATTCCAAGAAGTATCTCATTGATGCCACACACCATATTTGATTCAACAGAGGGTAGATGTTGAAGTTATCTCTGCTTCATAGCTAGCACTAATAATCGTACTGTGAATGTTTGTGGGTAAGCATTGAGACAGACATGTTTTCACTTCTCTTGGTTGCACAGCCAGGGTTGGGCCTGGCGGACCACATGGTAACTCTGAGTGACATTTTGAGGCACAGTTTGCCTTTTGTATCTTCCTACCGGTGACGAATGGGAGTTTGAGCAGCACTTGGTGCTGTTGGTCTTTATGGGCTTGAACTGGTACCTCACTGTGGGTTTGATTGGCACTTCCTTGATATCAAATGATGCTGAGTCTCTTTCCCATTGGTTATGGGCTACTTGTATGTTTTCTCCGGAGAATTCTATTCAAATCCTTTCTGCATTTTGAAACTGGGGTATATTTTAGTATCTTTTTGTTACTGAGCTGTGAGAGTTATTTTCTTATTTTCATTACTAACCCTTTATCATGTTATTTGTCAATTTTCTCCTGCTGTTTAGCTTGTCTTTTCATTTTCTTAAAAATATTTTATTTTTCAATTAGAACAGTTTTCATATAATATGCTTTATCATATTTTCCCCTCGATCCCCCGACTCCTCCCAGAGCCTTCCCACTTTGTGTTTTTACGAGGGTATTGTTTTGTTTTTGTCTTGACGATCTGGGAGGTATCATTTGACTTCGTGAGCGTCTAAGTTTGATGAGGCCTACCATGTCTACTTTTCTTTAGTTATTTATACTTTTGCTGGTAGGGCTCCAGGTCCACTGTCTAGCCTTGGGCCACAAATGTTTACTTCTACTTCGCTTGTCACATATGTAGCTTTTGTCATAGACTTCTGAACTATTTTTGAGGGTTTCTTTGGGTTTTTTGTTTTGTTTTGTTTTGTTTGCCTGTGCAAAGCAGGAGTCTAGTTTCATTCTTTTACATGTGGACACCTGGTCTTCTGTGCACTCATTTAAAGCTATAAATCGTATCTGAATGTAGTTTTATTTTCTATTTCCCAAACTATATCCACTTATCACTTTGGAATTTTGTCTTGATTTGGTTTGATTTGGAGGTTTGGATTTTTTTCCCCTTCCTCACTGATCCTAGATAGGACTACTACTACAATTCTGAACCGATATTTAAAAAGCAGACAGAAGGACAGATGTTCTTATGTTCCTCAAAGATGACAAGTCTTTCACTGTCCCATCTGACGTTAAACGTGAAGGTTTCTACTTTTAGGAGCTGGGAGTGCAGTATTTTTAATGTTACAACAACGACTGTTTACTCTTGTCCTAATTTTACAAGTGAGAAAGTTGCTCAGGTTGCAAGGCTGGTTAATCATGAGGCTGAGGTTTAAAAACTAGGTCTGTGATTTCCATATTTTTCTCTGGTGCTTTTCCAGCCATGAGGCACAGAGGTTGGATTACGCTGTGTTTGAGTCTGTCTGCTGTTCAGAAAGCATTGCATCCAAACTTCATGCAGAAATGAGTACGTCCAGGATACTGCACACTTGTGCGAATGATTGGGTTTTTCTCTTTTTATTGTTTGAGAACCTCATACACGTATATAAAATATTTTGATCAAATCTACCTCCCGTTGCCTCCCCTATAATTCCTCCCAGGCCTCTCCAAAAGTCTACCTAGTGCTGTCTATGTGTGTTTGGGTATAGGACCATCTACTGGAACCTGAGTAGCCTCTCAGAGAGCGTGTCTCTGAAGAAAACAGACCCTGTCTTGCTCTCCTGGCAGTCTGAGATAGTCCCCCTCTCACCACTCGCCAATAGCTCCTTAGCTAGGGGTGAAACTTTGTGACAACTCCATGTTGGGATTTTGTCTGCCTTGACCTTGCCCAGGTCTTGGGCAAACCATCTCAGCTGCTCTGAGTTCACCTGCACAGCTGCCCTGTGGTGTCTGGAGACCAGTATTTCAGAACAGTGCTCCACCGCCTCTGGCTTTTACATTTTTTCTGCCCTCTTTTCTGAGATGACCTCTGGGCCTTGGGAGGAGCGGCTGTGGTATGGTTGTTCCATTTAACTTTGAGTTTTTAATGGATACCATCTATCAGGTTAAGGAACCTCCTCTCTGTTTGTAGTTGGTGAATACTCTTCTAGCTCTTTGCTTGATGACTCTATCTCCTGCTAGATGCTAAGCCTAGCTCTGACTTATTTGTTGCACAAATAAGCACAAAATAAAGTGTAGGCATTCCGTAACCATTTCCCAGGTGGCAGAAGAAATCGTGCATTCATCTTTAAATTTCATTTTAATTAAAACATAATTACATCATTTCCCTACTTCTTATCCTCCCTCTAATCTCTCCCCTGTCCCCTCCTCACTTCCTCTCACATTTATAGCTCCTTCTTTTATTATAATTACATACATGAATGCATACATAAATGCACAAATATATAACCATGACCTGCTGAGTCTGTTGAGTGTTACTTGTGAGTGTATGACTTCAGGTACAGCCAATCAGTGGGCTCATCCCTGAGAGAGAATAAGGTTCCCTCTCTCAGTGGTCATTAGTGTCCTGTGTGAGATGTGGGACAATGTAAAGTTTCCTCCTTCCATGCTAGCATGTCTATCGATCTTGTCGCTGTTTAGGTCTTGTTGAGTCTGCCATATTGTTGCTGGGATGAAAGGATGTGCCATGCTTACTGCATGACCTTCTTCCCAAGAGAAGGAAGTGATGGCACCGTCATCGGGCCATTCTATTTCTGGGTCACATTCTGTAAACTATATAAGAAGCCTTTCATGTACGCTAGACTTGCTGATCAGCTTGGCTTGTACCACCATTGTTAGATATTAGAATTGTTTATTAGAATCTATTTGTTTTGAGGAAGGCATGTACCTCCACTGCCGAATTGCAGGCAGTGTTTTTGTTAAAAGGTTAAGGTCAGAAGGTGCTGGGGGCGTACTGGGTCAGGTGAGCATGTTGATCTTAACTGACTCCAGAGTCTAGAGCTTTAGTGCACTGTGGATCGGATCGCATCTTGTTGAAAGCTTGTCCAGCTAATGCCATCTGTGTCCATGTTGGCTTGCTGACAATACAGCAGGAGAGTGCCTTCTAACAAATTAGTACTTCTACCATCTCCACTGCACAGCAATCTTTAATCTGTTTGCAAGTGGAAAATAGGCAGCAACAGCCTTGATCTTTCTTATTGTTATCTACAACTCCTCAGAGTGGGCCCACTTCTACCCCAACAAATGCTTCTCTCCTAACCTTCAGGCCAAGGAATTCCTTCTTAGACGCCTGGGTAGACTTTGGGTGGAAGACTGTCATTACAAAATAGATGAGACCATCATTAGTTTGGATCAAACTCTCCCATGTAGGTCATATTAACAATTGGGGCTGGAAAGATGGCTCAGTGGTTAAGAGTACTGACTGCTCTTCTAAGACTCCTGAGCTCAATTCCCAGCAACCATGTAGTGGCTCATTTTAAGATCTGGGAGCCAGGCATGGTGGCACAGCCTTTAATCCCAGCACTTGGGAGGCAGAGCCAGGTGAATCTCTGTGAATTCCAGGCCAGCCTGGTCTTGAATGAACTGTCCAGCCAGGACAGCAAGAGCTACAGAGAGCTCCCACCTTGATAAAACAAAGAACGAAAAATAATGAAATAAATTGGGAGTCTGGATTTGCAGCTGGTAATATGACAATTACTAGATCCCACTAAGAACCACAGCCACCTTAGAAGATCGTCGTCTAGCTTTCTGAACTGGCTTTTGAAGAGAAATGTACTCAATCAGGAAACTAACATGCACACTCTGAGAGCATGATCAGAGGGTGGGGGTGGGGATCTGGATGTTCGAGACCCACCAGTGGGAAAACAACCGAGCTAGACATCGTGTAGAGGGCAACCATTCCTAGGGGAGCGAAAGGGGGAGTCGAAAGAAGGGGGAATCAATAAAATTCCTTAGGTGGCTTCATCGTGCAGAAAGCTTTGCAATTCTGCTGGAGACTTTGGTAAGAATTATTAAGATAATGACGGATTAGGCAGACCAAAAAAAAAAAAAAATGAGGTAATTAGTAACTCCTGGAAGAACAAAAAGTTACAGAAAGAAGAAAATGTGATCCAAGAGTGTTTCCTCACTTTGCAGTGAGCAGTACATATATAATTGTAATAAAGTAGAAATTAAATATTGATTTAACAAAAAGTGTGGCCTAAATATATTAGAAGGATGAAGAGAGAGACGATAGAGATATAAAAGTGGGCAAGGAACACCCAGCCCTGTCGTCCATCACAGAAATCGATGGGCTTTTAAAATTGGCAAGTGAGGGAGCTGCTGCCTAAGTTTGCAGTTTAGAAATGTGGGCTGAAGCTTCCAGAGCAATTCTGAGGAAATCTGGGGACAGGAAGGATGTAGCAATCTGCCCCTTTTCCTTCATGGCTTGTAGCAATGATTGAGTTTTCAAATTATATGTATAAGATTGAATTCTTACTAGAAAATCAATACAACGGGTAGAAAACAATCCTGAAAGTAAAATATTTAGGACTTGAAAGAAGGGGAGAGCAACTGGGAAGGAAAGCCAGGGACCCTAACACCCATGGGCAAGGACATGTTATATTTGCAGGAGAGATGTCTATGCAAGGTTGTCACTTAATCTGAGCCACACACACTTGAGACAACAGCAGACTGAAGCATGCAGAGGGCAGAGGGCAGAGGGGTCCATCTGGTTTGTCCACAGGAGGACAAAACAGGGGCTGACTCCATGACACTTTTGACTGCTGCAGGCACACACAGGGCTATTATTTTGGGTGAGCTGTGGTTTGAATTCCAGCTGCAGGCAGAGTGGCGCAAATGGGGTAGTGTCTTTTGTGGATCTTGAGGATAAAGCCATTCCCATCTACTGGGAGGGGGGTACCTTCTGAGGGGACCAGTCACGCTCACAGTGGGAAATTCCCAGGCCTATTATCTGTTCCACATAGTAGGAATGGGGTTGGGCCTCCATGCTCACTTGAAGACAGGAACAAACTTTGCTCTCCCTGGGCCCTTTGCTATGAGATTCTGTGTCTTTCTCTAG
Seq C2 exon
GACATGTTCCCAGTGGTCACTCGAGGAAACGGCTGTCCCCATGGAGCTGTGCCAACCCCTACGGTCTGCAGCTAAACCTGGTATTTGAAATGGAGTCAAAGATGCCTTCGAAGAGCCTAGACTGAGGTCCTGGCTGAGGCAGGCTCCGATCAACCCTAGGTCATCAGAGCACGTGCTGATATCAGCAGGCACTTGCAGGAAAACAAAACAGGAAACGTTCACTCCTGCTGACATTCCATCCCCTTCCCACACTCTCCCTGGATCCATTTCTTGGGAAAACCAGTCTGATCCAGTTTATGCACCCCCCAGGTGGTGTTGCTGACCCAGGAATGGTCTACTCAGTGCCATTTGCCAAATAACCACATTCTTTTGTAGCTGCAGCAGAGTTGTTTCACAGCTAAATGGCCAAATAAAATTTATTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043705-Capn13:NM_001033444:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: