HsaINT0041144 @ hg38
Intron Retention
Gene
ENSG00000203710 | CR1
Description
complement C3b/C4b receptor 1 (Knops blood group) [Source:HGNC Symbol;Acc:HGNC:2334]
Coordinates
chr1:207621973-207623068:+
Coord C1 exon
chr1:207621973-207621996
Coord A exon
chr1:207621997-207622992
Coord C2 exon
chr1:207622993-207623068
Length
996 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TACCTTGTTTTACTGCCTAGGCA
3' ss Score
7.43
Exon sequences
Seq C1 exon
GTACACATGATGCTCTCATAGTTG
Seq A exon
GTAAGTTTTATGAAAGTTTTGCTGAGGAATTCTGGCATCTATAACAGTAAGTACCTACCTATAATGAATGAAATGTAAAAAGAGAGATCAAAATGTCTTGAGGTGTAAAGAGATCAAAATATCTTCAGTTGTAAGTTCAACTAGAAAGAAAATAATGATAAGTTAGGCCACAATATGGTGAAACTGGCATCGTCATATGCATACTAAATAACCTTCATCAAAGGCTCTTTACTATCTTTGAACCATTACAAATGAATAATCATTCATCAGTGTCAAAAATTCTTTATTTGAATGTGGTGGGAGAATGCAACTTCTTCTTTCAGTTGTAACCTGGAGTATGCTTCCAGATGGTGATCCTGCTCATTTGCACAAATAGAAAGCCATAAGACCAGTCTTCTGAGCCCATATCTGTGATTTGCCTAAATAAGAATAGTTTTGTAATAAAGTTTGCTTCCAAGGGAATACTGTGGCATATTACTCTTACATCCCTTTTTACGCATCTGGACACTGAGACACAGAGAGTTAACGTAACTTGTCCAAGACCACAGAATGGGGTAGCCTGGGTCTACTTATCTGTGGAGACTGTGCACTTTAACAATCAATAAATGGACAAAATGACCTAAATATGTAATTCAACAAGAGAGAGAATTCCAGTATTTTCACAATGAAATGCCTGTGTGTTAAGTCTTAGGCAAGAGACATGGGCAGGGCCATGGAGAGCTGGTGGCCAGCTGCCCCATCACGGTTCTCACTTACTTTTGGAAAAGCTGACATTGGACTAAACGTTACAAAACGGCTCAGCTCACACCTTAACTTTAATAACCCTGTGGGAGTGAGACTAATGCTATAGAAACCCAGAGTAAAGCAGAATGTATAGTTACATCTTTAAAAAAAAAAAAGCATTGGCAATCTGTAGTGGGACTGGATACTAAGATAGAATTTAAAACCTGTAAGTTATATTTTCCATGCATTTAATTACCTTGTTTTACTGCCTAG
Seq C2 exon
GCACTTTATCTGGTACGATCTTCTTTATTTTACTCATCATTTTCCTCTCTTGGATAATTCTAAAGCACAGAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000203710:ENST00000400960:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development