MmuINT0041963 @ mm10
Intron Retention
Gene
ENSMUSG00000016481 | Cr1l
Description
complement component (3b/4b) receptor 1-like [Source:MGI Symbol;Acc:MGI:88513]
Coordinates
chr1:195111080-195112397:-
Coord C1 exon
chr1:195112374-195112397
Coord A exon
chr1:195111156-195112373
Coord C2 exon
chr1:195111080-195111155
Length
1218 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TATTTTGTTTTCCTGTTTAGGAA
3' ss Score
11.22
Exon sequences
Seq C1 exon
GCTCAATCAGTGGTCTAATTGTTG
Seq A exon
GTAAGTTCTGTGATGGGTTTATTGAGAAATTCTTTAGTAGTATCTACTTATAAAAAATGATATGTAAAAAGAAGTAAAAAATATTTTTTAAGTTCAATTAAAATTAATGTAAATTTAGGATAGCAGTTTTCAACCTGTAGGCCATGACCCTTGGGGGCTGATGGACCCTTTCACAAGGGTCACTTAAGGAAAATAGATATTTACATATGATTCATTACAGTAGCAGAATTACAATTATGAAGTAGCTATGACAATAATTTTATAGTTGGGGTCACCACAACATGAGGAACTATATTAAAGGGCCACAGCATTAGGAAGTTTGAGAACCACGGGTTTAGGGTGTCATGAGATTGGCATCTTCATGCACTTTGAAGGACCTCATCTTTGAATTATTTGAGTGAGTAATCAATCATACTTCGCTGTCAACAATTATTTATTTTAATATGACTGGAGAGTCAAATCTTTCTTTACTTTTTACCCAGAAATATCCATCCTGATAGTTTGTATTGTTAAAGTCATAAGACCGTCATGTGAGTGAATCTTGTGTCTGGAGATAAAAGACTTAGAGGAGAAAGGAGGTTTTATTCTTAGCTAATAATTCCAGGGTAGAGGCCATCACTGTGGGGAGTCAAGGTGGCAGGAATTTGAAGCAGCTCCTCACATCCACTGTTAAGAACTTTTTTCCATTCTTGTACAGTCCAAGGTCCCTTGCCTGAGAATGATGCCACCTACAGTGTGTTTCTATAGGGCCACCTTAATAAATGTAATTAAGATCTCTCCCTCAGACATGGCCATAGTCCAACCAGAGCTAGCTAATTCCTCACTCAGATTTTCTTGTCAAGTGATTCTAAACTGTGTTAAGTCGATCATTTAGCCAACACAAATGGATTTATACAGTTTGATACCAAGGGGATTTCTGTCACAGAGAGCATCCTGTCTCATGCATTCCACTAAAGCCTTGGGTAAACTGTGTGTACTGAGCCCAGCAGCACCATTGTTATGAAGGGCGATGTTGTTGGGAAGAAGCTTATGGAATGTTCTGGTGGCCCCATAACTAATAATGTAGGTCTAATGTCCTAGATTAAAACCAAAATAGAGCAGAACCTAGGCTAAAGTTACATGGAAAAGAATCATTGATAACCAACAGTGGGATTAGCTATTAAGATAGAGTTTAAAAATTTTGTGATGTGTTTTCATTTATTTTGTTTTCCTGTTTAG
Seq C2 exon
GAATTTTCATTGGGATAATCGTCTTTATTTTAGTCATCATTGTTTTCATTTGGATGATTCTGAAGTATAAAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016481:ENSMUST00000075451:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF139081=Shisa=FE(9.6=100),PF0200911=Rifin_STEVOR=FE(14.0=100),PF067166=DUF1201=FE(16.0=100),PF066677=PspB=PU(7.3=33.3)
A:
NA
C2:
PF139081=Shisa=FE(30.1=100),PF0200911=Rifin_STEVOR=FE(43.9=100),PF067166=DUF1201=FE(50.0=100),PF066677=PspB=FE(61.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types