MmuINT0041963 @ mm9

Intron Retention

Gene

ENSMUSG00000016481 | Cr1l

Description

complement component (3b/4b) receptor 1-like [Source:MGI Symbol;Acc:MGI:88513]

Coordinates

chr1:196937274-196938591:-

Coord C1 exon

chr1:196938568-196938591

Coord A exon

chr1:196937350-196938567

Coord C2 exon

chr1:196937274-196937349

Length

1218 bp

Sequences

Splice sites

5' ss Seq

TTGGTAAGT

5' ss Score

10.47

3' ss Seq

TATTTTGTTTTCCTGTTTAGGAA

3' ss Score

11.22

Exon sequences

Seq C1 exon

GCTCAATCAGTGGTCTAATTGTTG

Seq A exon

GTAAGTTCTGTGATGGGTTTATTGAGAAATTCTTTAGTAGTATCTACTTATAAAAAATGATATGTAAAAAGAAGTAAAAAATATTTTTTAAGTTCAATTAAAATTAATGTAAATTTAGGATAGCAGTTTTCAACCTGTAGGCCATGACCCTTGGGGGCTGATGGACCCTTTCACAAGGGTCACTTAAGGAAAATAGATATTTACATATGATTCATTACAGTAGCAGAATTACAATTATGAAGTAGCTATGACAATAATTTTATAGTTGGGGTCACCACAACATGAGGAACTATATTAAAGGGCCACAGCATTAGGAAGTTTGAGAACCACGGGTTTAGGGTGTCATGAGATTGGCATCTTCATGCACTTTGAAGGACCTCATCTTTGAATTATTTGAGTGAGTAATCAATCATACTTCGCTGTCAACAATTATTTATTTTAATATGACTGGAGAGTCAAATCTTTCTTTACTTTTTACCCAGAAATATCCATCCTGATAGTTTGTATTGTTAAAGTCATAAGACCGTCATGTGAGTGAATCTTGTGTCTGGAGATAAAAGACTTAGAGGAGAAAGGAGGTTTTATTCTTAGCTAATAATTCCAGGGTAGAGGCCATCACTGTGGGGAGTCAAGGTGGCAGGAATTTGAAGCAGCTCCTCACATCCACTGTTAAGAACTTTTTTCCATTCTTGTACAGTCCAAGGTCCCTTGCCTGAGAATGATGCCACCTACAGTGTGTTTCTATAGGGCCACCTTAATAAATGTAATTAAGATCTCTCCCTCAGACATGGCCATAGTCCAACCAGAGCTAGCTAATTCCTCACTCAGATTTTCTTGTCAAGTGATTCTAAACTGTGTTAAGTCGATCATTTAGCCAACACAAATGGATTTATACAGTTTGATACCAAGGGGATTTCTGTCACAGAGAGCATCCTGTCTCATGCATTCCACTAAAGCCTTGGGTAAACTGTGTGTACTGAGCCCAGCAGCACCATTGTTATGAAGGGCGATGTTGTTGGGAAGAAGCTTATGGAATGTTCTGGTGGCCCCATAACTAATAATGTAGGTCTAATGTCCTAGATTAAAACCAAAATAGAGCAGAACCTAGGCTAAAGTTACATGGAAAAGAATCATTGATAACCAACAGTGGGATTAGCTATTAAGATAGAGTTTAAAAATTTTGTGATGTGTTTTCATTTATTTTGTTTTCCTGTTTAG

Seq C2 exon

GAATTTTCATTGGGATAATCGTCTTTATTTTAGTCATCATTGTTTTCATTTGGATGATTCTGAAGTATAAAAAACG

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000016481-Cr1l:NM_013499:7

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=NA C2=0.000

Domain overlap (PFAM):

C1:

PF104454=DUF2456=FE(10.5=100),PF139081=Shisa=FE(7.0=100),PF067166=DUF1201=FE(17.4=100),PF055686=ASFV_J13L=FE(9.1=100),PF151021=TMEM154=FE(9.2=100),PF066677=PspB=PU(5.3=33.3)

A:

NA

C2:

PF104454=DUF2456=FE(32.9=100),PF139081=Shisa=FE(21.9=100),PF067166=DUF1201=FE(54.3=100),PF055686=ASFV_J13L=FE(28.4=100),PF151021=TMEM154=FE(28.7=100),PF066677=PspB=FE(43.9=100)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSMUSP00000027918