RnoINT0041744 @ rn6
Intron Retention
Gene
ENSRNOG00000008193 | Cr1l
Description
complement C3b/C4b receptor 1 like [Source:RGD Symbol;Acc:2399]
Coordinates
chr13:113832448-113833752:-
Coord C1 exon
chr13:113833729-113833752
Coord A exon
chr13:113832524-113833728
Coord C2 exon
chr13:113832448-113832523
Length
1205 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TATTTTGTTTTCCTGTTTAGGAA
3' ss Score
11.22
Exon sequences
Seq C1 exon
GCTCAAACAGTGGTCTAATAGCTG
Seq A exon
GTAAGTCCTGTGATGGGTTTACTGAGAAATTCTTTAGCTGTAAGTATCTACTTATAATAAATGATATGTAAAAAGAAGTCATAATATCTTGTAAGTTCAATTAAAATTAGTGTAAGTTTAGGGTAAACTTAGTGTAAGTTGTGGGTCATGACCCTTGGGGCTAATGGACCCTTTCACAGGGGTCACTTAAGGAAAACAGATATTTACATTATGATTCGTTACAGTAATAGAATTACAATTATGAAATACCAATGAGAATAGTTTTATAGTTGGGGTCACCACAACATGAGGAACTGTATTAAAGGGCCAGAGCATTAGGAAGGTTGAGAACCACTGGTTTAGGGTATCATGAGATTGGCATCTTCATGCACATTGAAGGACCTCATCTTTGAATTATTTGAGTGAGTAATCATTCTTTGCTGTCAACAATTCTTTATTTTAATATGACTGGAGAGGCAATTCCGTCTTTACTTTGTGCCCAGAAATGTGGTCATCCTGATAGTTTGTACTGTTAAAATTGTAAGACCATCATGTGGGTGAATCCTGTGTCTGGAGATAGAAGATTTAGAGGAGAAAGGAGCTTTTATTCTTAGCTAATAATTCCAGGGTACAGGCCATCACTGTGGGGAGTCAAGGTGGCAGGAATTTGAAGCAGCTTCTCACATTACAGTCAAGAACCTTTCTCTGTTCTTGTATAATCCATGATCCCTTGCCTGAGAATGATGCCACCTACAGTGTGAGTCTATAGGGCCACCTTAGTAAGTAAGATACCTCTCTCAGCCATGCCTACAGGACAACCAGAGCTAGCTAATTCCTCACTCAGTCTCTCAAGTGATTCTAAACTGTGTCAAGTTGATCGTTTAATCAACACAAATGGAATTATACAGTTTGATACCAAGGGGATTTCTATCACATAGAGCAGCCTGTCTCACCTTCTATTAAAGAGTTGGGTAAGCTATGTGTACTGAGTCCAGCAGCACCATTGTTATGAAGGGCTGGGTTGTTGGGAAGAAGCTTATAGAATGCTCTGGCCACTCCGTAACTAATACTGTAGGTCTAATGCCCTACATTAAAACCCAAATAGAGCAGAACCTAGGGTAAAGTTACATGTAAAAGAATCATTGATAACCAACAATGGGATTAGTTATTAGGATAGAGTTTGAAACTTTTGTGATGTTTTTCATTTATTTTGTTTTCCTGTTTAG
Seq C2 exon
GAATTTTCATTGGGATAATCGTCCTTATTTTATTCATCATTTTTTCCTACTGGATGATTATGAAGTTTAAAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008193:ENSRNOT00000010799:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]