HsaINT0049244 @ hg19
Intron Retention
Gene
ENSG00000197653 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:2941]
Coordinates
chr12:124343697-124345717:+
Coord C1 exon
chr12:124343697-124343815
Coord A exon
chr12:124343816-124345558
Coord C2 exon
chr12:124345559-124345717
Length
1743 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
TAAAGCCTCTCTTGATTTAGGCT
3' ss Score
6.92
Exon sequences
Seq C1 exon
GTGGATAAAGTGGTTCAAATGTTCGAGACCATGTTAACCCGCCACACGACGATGGTGGTGGGGCCCACCAGAGGGGGCAAGTCCGTCGTCATTAACACTCTGTGTCAGGCCCAGACCAA
Seq A exon
GTGAGTATGACCTCCGTAGGGAGGGCCTGGCTGCCACAGGGGCTCACAGTATATGTTTGGTGCCAGTATTACCAAGTCCCACTTTGCTCTCTGATTTCCTGGGAGGGTAAATTTGTAATACACACCCCTTTCGACTCAGCGTGTTTTTACTGACTTTATTGCAGACTTAGTTAAGATATTTTAGAATGCAAAATAGCAACCCGCTTGTGCATCAGATGGTGAATAGGTTCATTTGTGAAATGAGAATTTCACAAACTATCTTATAAGGATATTTTGAAAATGAATGTAAGTCATAGTTTCTTGGGGTCCAAATTGCTTCCTTAAAGTAAGTCAGGATTCACCTTATGCAGTACTGCTGTGGTTTCGCAGTGGCCAGAAAACGAATGTCACCTCCCCGGGTGCCTTATAATCGCTAGCCCTTCGGGGGCAATTCTTCACGAAGGAAAAAGTGATCGTACACTCCCACATTGAAGATCGTAAAGGAGCCAGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCTGGGTGGGAGGATCCCATAGTCCAGGATTTTGAGAACAGCCTGGGCAACATAATGAGACTCCGTCTCCACATTAAAAAAAAATTAGCTGGGTGTGGTGATGTGCACCTGTAGTACAGCTACTCAGGAGGCTAAGGAGGGAGGATTGCTTGAGCCCAAGAATTTGAGGCTGCAGTGGGCTAGGATTGTGCCACTGCACACCAGCCTGGGCAACAGAGTGAGACCTTCTCTCTAAAAAAAAAAAAAAAGGAGAGTATGTCATAAAAGCCTGCAGTGAATTGAAAGCCTTCTACTGAAAGTGGATTCCTGACTCCTCACTTCTCTTCTAAGCAATAACTAGATTCCAGAAAGACCTCCGTGGATGCTGATAGCCCGGCAAAAATCTAAATCAAGCCAAAGTTTCTGTGACTTAAACATTTCTAGGCAGTCTATAAAATCTAAAGAGTAAGTGTCTGTCATATGTTCCCATTATTTCTTCATATGTTTCATATGAGAAAACCAGTCGACAGTGGCTTACTGACTCTAAGTGGGCTGTGCCGTGGCCATCTGCATTTCATTCTTTAATTCATTCATTGTAAGTTTATAGAACTATCACACAGTTGTATGCATGTGTAATATAGCATGTACATTATGATTTACTGATTCGTTGGTTGTGAACTGTGGAGTGTGTGAAGTTTTGTTCTCTATAGATGAATTAATCCTATAGTTAGTGCTGCAGGGATTTACAGGCACTGTGGTGAGAAATGCCCTGTCTGCTTGATTCATGAAGTCAACAGAGCAGCTGTTGTTCTGTAGATAAGGAGGATTGAACATTAGTAGTCCAAAGCCTTGTTATTATCGTGGATGACTGAGTGTGGTCTCCTATACGCCCTTAATTCTGAGATATTTACTTAAATGTCATATATATGAATATGTAATATGCATAAATATGAAATATACATGAAAGTTAGCTTCTTGGTGCCCTCCAGAGGCAAAGCTGTGCTTCTAGTTCAGACTTCATTTGTGCTGTGGCCACATTTTTGGTGAAATGTGGTTGCTTTATATTTAGAAGAAAGCACTAACAGTGAAGGGAAGCCCAGTGAAGAGTTTGCATGGGTTGCATTTTCAATTTTGGATTAAAGTCAAAACATCTAATTCCTCATAGAGGGAACCCAGACTGTTTTCCTCATGCATTTAGTTGTCTTGAACCATGGCTAAAGCCTCTCTTGATTTAG
Seq C2 exon
GCTTGGGCTGACGACAAAGTTGTACATCCTGAACCCCAAAGCCGTGAGTGTCATAGAACTCTACGGCATCCTGGACCCAACCACCCGAGACTGGACAGATGGGGTGTTGTCAAACATCTTCAGGGAAATCAACAAGCCAACAGACAAGAAGGAGCGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-DNAH10:NM_207437:37
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0319311=DUF258=FE(65.0=100)
A:
NA
C2:
PF077289=AAA_5=FE(38.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGATAAAGTGGTTCAAATGTTCGA
R:
TTTCGCTCCTTCTTGTCTGTTGG
Band lengths:
278-2021
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)