GgaINT0008945 @ galGal3
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4929698-4930144:-
Coord C1 exon
chr15:4930026-4930144
Coord A exon
chr15:4929857-4930025
Coord C2 exon
chr15:4929698-4929856
Length
169 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TTTTCTTGTTGTATTTCTAGGCT
3' ss Score
9.32
Exon sequences
Seq C1 exon
GTGGATAAAGTTGTTCAGATGTATGAGACAATGTTAACTAGACACACTACAATGGTGGTTGGGCCTACTGGAGGTGGCAAATCAGTTGTCATTAATGCTTTGTGCCAAGCCCAGAACAA
Seq A exon
GTAAGTATACAGTTTGATGCGTGGAAATTTGGCTGAAAAATGGCATCATTCAGACTTGTGTAGTCATGTCAAAATCATTAAAGCTAACCATAATGTATGCTTGGGTTATCATGAGATGGTATTGTGTCATTATAATATTGCTTTTCTTGTTTTCTTGTTGTATTTCTAG
Seq C2 exon
GCTGGGATTATTGACAAAGCTTTACACACTGAATCCTAAAGCTATGTCTGTGATTGAACTATATGGGATCCTTGACCCTACCACACGAGACTGGACAGATGGAGTCCTGTCAAACATTTTTCGGGAGATCAACAGGCCTACTGACAAGAAAGAGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(17.4=60.0)
A:
NA
C2:
PF077289=AAA_5=FE(38.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTAGACACACTACAATGGTGGT
R:
TTCGCTCTTTCTTGTCAGTAGGC
Band lengths:
242-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]