BtaINT0050186 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54119592-54122070:-
Coord C1 exon
chr17:54121952-54122070
Coord A exon
chr17:54119751-54121951
Coord C2 exon
chr17:54119592-54119750
Length
2201 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
AGGCTTTTCATTCTATGTAGGCT
3' ss Score
6.57
Exon sequences
Seq C1 exon
GTGGATAAGGTGGTTCAGATGTTCGAGACCATGTTGACTCGCCACACGACGATGGTGGTGGGGCCCACGGGAGGGGGCAAGTCCGTGGTCATTAATGCTCTGTGTCAGGCCCAGACCAA
Seq A exon
GTGAGTAATGGTGTCCATGGGGAGGGCTTGGTTGCCAGGGTGGTTTCAGGTGAGATCGGTGGTGTATTACTTGGTCCCACTTTGTTCTCTGATTTCCTGGGAGATTACATTGGTCCCAAATAGCCCCCTTTAAGCCCAGAGCATCTTTTTTTTGGGGGGGGCATGCCTCAGGGCTTGTGGGATCTTAGTTCCCTGACTAAAGATGGAACCCATGCCCCCTGCAGTGGAAACGTGGAGTCCTAACCACTGGACTACCAGTGAAGTCCCCAAACCAGAGCATCTTAACTTGTTTCATTGCTGATTTAGTTGATATATTTTAGTAGGCAAAACAGTGAGCCTTTTGTCCATCAGGCTGTAAATAGGTTTATTTATGAAATGATTATTTCACCAGCTATCTTATAAAGATGTTTTGAAAATTAGCTTGGGTTGTATTTTCTTGACGTTCAGATTCCTTTAAAGCCAGCCAGGACCCACACCATTATGCAACACTATTATGGTATCAGAGTGGCCAAAAAGAAAGTCACCTCCCTAAATGCCTTGTCATCGCCAGCCTTGCAAGGGCTGTATCTCTTGAAGGAAAACGTGACCTCACACTCCTAGTATAGAATGTCACAAAGACCTGTGGTGAATCAACCAATACTCCTATACTGAAAATGAGTTTTCTGATTCTCACTTTTCTCCTAAGCAGTCACTTCCCAGGTAGCGCTAGTGGTACAGAACCCATCTGTCAATGCAGGAGACATAAGAGACTCGGGTTTGTTCCCTGGGTCAGGAAGATCCCCTGGAGAAGGACGTAGCAACTCACTCCAGTACTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTGGTGGGCTGTAGTCCATAGGGTTGCAAAGAGTCTGACACAATTGAAGCGATTTAGCACACATGCAATCACTACATTGCAGAAAGATTTCAATACATGCTGATATTCCAGCAAAAATCTAAATCAAGCCTTATAATTATTGTGACTTTACCAGTTCTAGATAGTCTATAACATCTTTTATAGTTTATAAAATTTTATAAAATGAGTGTGTCATTTCTTCATATTCCTTCTTGTATTTTTCATGAGAAAACCATTGGACCATGGCTTACTGATTGTAAGGATTTTATTCCATAGCCATCCTGTATTTATTCTTTAATTCATTGTTAGATCAGTTATGAAACTATTATATATAGATGTGAGTATCAGTATGCCATTATTATTTTCATTTACTTTGTTAATTATGAACTATGGTTCATGTGAACTTTAGTTTTCTGTGGATGAATTAATCCCCCAGCACCATGGGAGTTTACAGGCAATGTAGTGGGAAATACTCCTACATACCCCTACATATAAGTCTAAGTGATTTATAAAAAAAAGCAACTCAGGGTCTTCCCTGGTGTTTCAAAGGCTTAGACTCCAAGCTGCCAATGCAGGGGGCCTAGGTTCGATCCCTGGGCAGGGAACTAGATCCTCCATGCCTCAACTAAAAGAACCCATGTGCTGCAACCAAGACCTGGCGCAGCCAAATAAGTATCTAAAAAATAACAACGCAGAGTGGATGTCATTCTATTAACACAAGGCAGTGAACATCATGAGTTCAGAGGTTTTATGTTACCCTGATGACTGTTACCTCTTATACAGTAGTTGTGAAATATCTACATAAATGTGCCATATGCATGAATATGTAAACACACAGAGATGAAATACACATGAAGGTGAGCATCTGTTGCTCCCCAAAATCAAAGCCGTGTTATCAGTTCAGACCTCGCTTATATTGGGGCCACATGTCTGGTGAAAGGTGGGTCCCTTGCCTTTGTTAGTCGCTCAGTCACGTCTGACTCTTTTCGACCCCATTGATGTGGTCTACCAGGCTCCCCTGTCCATGGAATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATTCCCTTCTCCAGGGGATCTTCCCCATCCAGGGATTGAACTCGGGTCTCCTGCATTCACAGGCAGATTCTTTACCATCTGAGCCAACAGGAAAGCCCTCCCTTGAGTTTAGTAAAAACCATTAACAGAGAATGGGAAGCCCAGAGCAGGGTTTGGATGGTTTGCATGTTAAATTTTGGATCGGATCCAAAATCTAACCCCCTACATGAGTGGCCTGGATTGTTCTAATGTGTTGAGTCTACCTGAGTCCTGGCTGAGGCTTTTCATTCTATGTAG
Seq C2 exon
GCTTGGGCTGGTGACAAAGCTGTATATCCTGAACCCCAAGGCTATGAGTGTTATAGAGCTGTATGGCATCCTGGATCCCACCACCCGAGACTGGACTGATGGGGTGCTGTCCAACATCTTCCGGGAGATCAACAAGCCCACGGATAAGAAGGAGCGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523:ENSBTAT00000029664:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(17.4=60.0)
A:
NA
C2:
PF077289=AAA_5=FE(38.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development