HsaINT1011306 @ hg38
Intron Retention
Gene
ENSG00000197653 | DNAH10
Description
dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr12:123859150-123861170:+
Coord C1 exon
chr12:123859150-123859268
Coord A exon
chr12:123859269-123861011
Coord C2 exon
chr12:123861012-123861170
Length
1743 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
TAAAGCCTCTCTTGATTTAGGCT
3' ss Score
6.92
Exon sequences
Seq C1 exon
GTGGATAAAGTGGTTCAAATGTTCGAGACCATGTTAACCCGCCACACGACGATGGTGGTGGGGCCCACCAGAGGGGGCAAGTCCGTCGTCATTAACACTCTGTGTCAGGCCCAGACCAA
Seq A exon
GTGAGTATGACCTCCGTAGGGAGGGCCTGGCTGCCACAGGGGCTCACAGTATATGTTTGGTGCCAGTATTACCAAGTCCCACTTTGCTCTCTGATTTCCTGGGAGGGTAAATTTGTAATACACACCCCTTTCGACTCAGCGTGTTTTTACTGACTTTATTGCAGACTTAGTTAAGATATTTTAGAATGCAAAATAGCAACCCGCTTGTGCATCAGATGGTGAATAGGTTCATTTGTGAAATGAGAATTTCACAAACTATCTTATAAGGATATTTTGAAAATGAATGTAAGTCATAGTTTCTTGGGGTCCAAATTGCTTCCTTAAAGTAAGTCAGGATTCACCTTATGCAGTACTGCTGTGGTTTCGCAGTGGCCAGAAAACGAATGTCACCTCCCCGGGTGCCTTATAATCGCTAGCCCTTCGGGGGCAATTCTTCACGAAGGAAAAAGTGATCGTACACTCCCACATTGAAGATCGTAAAGGAGCCAGGCATGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCTGGGTGGGAGGATCCCATAGTCCAGGATTTTGAGAACAGCCTGGGCAACATAATGAGACTCCGTCTCCACATTAAAAAAAAATTAGCTGGGTGTGGTGATGTGCACCTGTAGTACAGCTACTCAGGAGGCTAAGGAGGGAGGATTGCTTGAGCCCAAGAATTTGAGGCTGCAGTGGGCTAGGATTGTGCCACTGCACACCAGCCTGGGCAACAGAGTGAGACCTTCTCTCTAAAAAAAAAAAAAAAGGAGAGTATGTCATAAAAGCCTGCAGTGAATTGAAAGCCTTCTACTGAAAGTGGATTCCTGACTCCTCACTTCTCTTCTAAGCAATAACTAGATTCCAGAAAGACCTCCGTGGATGCTGATAGCCCGGCAAAAATCTAAATCAAGCCAAAGTTTCTGTGACTTAAACATTTCTAGGCAGTCTATAAAATCTAAAGAGTAAGTGTCTGTCATATGTTCCCATTATTTCTTCATATGTTTCATATGAGAAAACCAGTCGACAGTGGCTTACTGACTCTAAGTGGGCTGTGCCGTGGCCATCTGCATTTCATTCTTTAATTCATTCATTGTAAGTTTATAGAACTATCACACAGTTGTATGCATGTGTAATATAGCATGTACATTATGATTTACTGATTCGTTGGTTGTGAACTGTGGAGTGTGTGAAGTTTTGTTCTCTATAGATGAATTAATCCTATAGTTAGTGCTGCAGGGATTTACAGGCACTGTGGTGAGAAATGCCCTGTCTGCTTGATTCATGAAGTCAACAGAGCAGCTGTTGTTCTGTAGATAAGGAGGATTGAACATTAGTAGTCCAAAGCCTTGTTATTATCGTGGATGACTGAGTGTGGTCTCCTATACGCCCTTAATTCTGAGATATTTACTTAAATGTCATATATATGAATATGTAATATGCATAAATATGAAATATACATGAAAGTTAGCTTCTTGGTGCCCTCCAGAGGCAAAGCTGTGCTTCTAGTTCAGACTTCATTTGTGCTGTGGCCACATTTTTGGTGAAATGTGGTTGCTTTATATTTAGAAGAAAGCACTAACAGTGAAGGGAAGCCCAGTGAAGAGTTTGCATGGGTTGCATTTTCAATTTTGGATTAAAGTCAAAACATCTAATTCCTCATAGAGGGAACCCAGACTGTTTTCCTCATGCATTTAGTTGTCTTGAACCATGGCTAAAGCCTCTCTTGATTTAG
Seq C2 exon
GCTTGGGCTGACGACAAAGTTGTACATCCTGAACCCCAAAGCCGTGAGTGTCATAGAACTCTACGGCATCCTGGACCCAACCACCCGAGACTGGACAGATGGGGTGTTGTCAAACATCTTCAGGGAAATCAACAAGCCAACAGACAAGAAGGAGCGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653:ENST00000409039:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0319311=DUF258=FE(65.0=100)
A:
NA
C2:
PF077289=AAA_5=FE(38.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGATAAAGTGGTTCAAATGTTCGA
R:
TTTCGCTCCTTCTTGTCTGTTGG
Band lengths:
278-2021
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains