DreINT0009119 @ danRer10
Intron Retention
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27740392-27741924:+
Coord C1 exon
chr5:27740392-27740561
Coord A exon
chr5:27740562-27741765
Coord C2 exon
chr5:27741766-27741924
Length
1204 bp
Sequences
Splice sites
5' ss Seq
TAGGTATAT
5' ss Score
4.89
3' ss Seq
CTGCTAAATTCTATCTTTAGGTT
3' ss Score
9.62
Exon sequences
Seq C1 exon
GATGTGGTTCTGATGAGAGCTCTTCGAGACATGAACCTACCCAAGTTTGTATTTGAGGATGTTCCTCTGTTTTTGGGCCTCATCTCAGATCTGTTTCCTGGACTCGACTGTCCACGTGTGCGTTATCCCAGCTTCAATGATGCTGTAGAGGCCATCCTGGAGGAAAATAG
Seq A exon
GTATATCATGATGCCCAGTCAGGTGATTCTTCCCTTCAAAACTTATTCTCAAAGAACTGCAACTATTGAAAGTTTGATTGAATTGATAACTGATTTTTGAATGTAGGTGGACAAAGTGGTGCAAATGTATGAAACTATGATGACCAGACACACAACCATGGTTGTCGGACCCACAGGAGGAGGGAAATCTGTGGTGATCAACACACTCTGCCAATCACAGACCAGGTCTTTTGTCTGCTCATAAGTAATAATCATTGATAAAATGAGTCCTGAAAATAATATGCTCAATTAAACGTACCATTGCGTGTCAAAAATGCAATGCAAGCAGAGTAAAAGTATTTGATTTAAATCCTAAAAGTGAAAGTACTCAATTAGTGAATATTACACTGCGATTATTCCACCTCATACCCTGCCAATTAAAATTGCAGCGTACATCAGTGACATTTTCTTTTAAGTGTGTTTCTAAGTGCAAGGTATAATTTATATACTATTCATGGACTATAAATGTAAAATTTAAGATTAATTTAATGTATGAACACATTACATTAGTATATGCATCTATAATAAGCCAACAGAAAGCAGGTTGATGCATTTATATGCAGAGCAAAACCTGTGTAACCAAAAAATCGAATAAAATTAGAGGCAAAAATTGAGCTGTGACAGTATGTTAATTCTTATGATACACTTTGGAAACTTGACTAACAGGTTACGAGTGTCTAGCAGTAGGCACTGCAAACCAAGCTTGCGCAACACTGATAGAATACATGTAATTTGTGCATGCATTTGAAAACGCAACATTCTATAGTGCATTTAGTTGTTGTTTAAGGCCATTTGGTGATTTCATTCACTTTAAATGAGTTTCCACACTGAAGTCAGTCTGTCTGATGTGATTTATCACTGTGTACTGATTGAACAGGAATCACAGGACTGATTATTCTACTTAAACAATCAATGTAATGAAAAAATAAGCATATAAAGTGGTGACTGCAAGTTGAAGGAAAGTAACGCAGTAAAAGTAAAGATGCAGCAGTAAAAATATAATCAAGTAAATTTTTTTTAAAACTTAGTAAAGGACAGTTCCTGAGGAAAAACTACTCAATTACAGTCATTTGAGCATTTGTAATGCATTATTTTTTTACAACTGCATTACTTTAACAATATGTTTTTCAGGCCAATACATATAACTGCTAAATTCTATCTTTAG
Seq C2 exon
GTTGGGACTGCTGACCAAATTGTACAGCCTGAACCCTAAAGCAATGAGTGTCATTGAGCTATATGGGATCCTGGATCCGGTCACCCGAGACTGGACTGATGGAATATTATCGAACATATTTCGTGACATCAATAAACCCACCGATAAAAAAGAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486:ENSDART00000135878:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF077289=AAA_5=PU(46.0=96.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTGGTTCTGATGAGAGCTCT
R:
TTTATCGGTGGGTTTATTGATGTCAC
Band lengths:
318-1522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]