MmuINT0050600 @ mm10
Intron Retention
Gene
ENSMUSG00000038011 | Dnah10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:124785148-124787475:+
Coord C1 exon
chr5:124785148-124785266
Coord A exon
chr5:124785267-124787316
Coord C2 exon
chr5:124787317-124787475
Length
2050 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
AAGCTGCCTCTTTGGTTTAGGCT
3' ss Score
6.16
Exon sequences
Seq C1 exon
GTGGATAAAGTGGTCCAAATGTTCGAGACCATGCTGACCCGCCACACCACAATGGTGGTAGGGCCTACAGGAGGGGGCAAGTCCGTAGTCATCAATACTCTGTGTCAGGCCCAGACAAA
Seq A exon
GTGAGTGTCCTGCGGGGGTTGGGGGCATTTGCCAGGGTGGCCTCTTGGGAAGTGTTTGGCGAGAGCTTTATTTCCTGGGGTGGGGGATGGGGGGTGGGAGATGGGGGTTAAGGGGTGTTCATCCCAACCATACGTTGTTTTTCTGATTGATGTGACCAAATACCTATAAAAAGCAGATTATGGCGAGGGAGGTCTCAGAGTCTGAGAGGGTAGAATCCATCCTGTCAGAAAGATGTTCTCAGAGGCAGGTGAGCGGGCACACTGCCCTGAGACTCCTCATATCTGCAAAGACCCGAAAGCCAATAATGCTGGACCTCGGTGAATTTTCCCCATTTTCCCATTTTATTTATTCTGGGACCCCAGCTCATGGGATGGTCCCGCCCACATTCCTTGGTTAAAATTCTGAAAATGAGGCTGGAGAGATGGCTCAGCAGTTAAGAGCACCTGCTGCTCTTGCAGAGGACTCCAGTTTTGGTTCCCAGCACCCACAGGAGGCCCCACAACCCTCTGTAACCGTAGTTCTATGGAATCTGGCGCCCCCTTCTGGCCTCTGTGGGTACTGCATGAGCGTAGTGCACAGACATACATGCAAGACAAAACGCTCAACATGTGCTGGAGCATCGTAAAGACTCACTGTGTGGTGACAGTCTTCCATCTAGAGAGGATTTCCAAACCGTTTGCTTCTCCACTTGCCAGTGACTGGGTTCTAGAGAGACTTGGACAAATGCCAGTATTACAGGCAAACTCTAAATGGGGCCATGCGATCTTTGTGACTGTAGTATTTCAGATTGCATAGCAAATCTCCAGACCAGGGCTGGGAGGTGGCTTCACAGTTAAGGAGCATTCTCCGAGCAAGCACGAGGGCTTGAGTTCGAATCCTGCATGCCCACCTAAAAAGGGGCATGGAGGTGGGTCTCTGTAATGCCAGTGCTGTGGTGGGTACACACCAGGCAGATCACTGTTGGCTGCAAGGCTAGCTCCAGGTTCAGTGAGAGACCCTGCCTCTAAAAAATAAGGCAGAGAGAATAGAGTAGGACAGACAGGCAGTGTCACCCCGTGGCCTCTGTGTGCTGTATGTACATGCAATGGGTGAATGTACATCACACACAAAATGTACAAAACCCTTGTGTCTTGGAGGTAACCACTTCTTACTTCTCCCGTCCCATATGAGGGACTCTGGGACAGTGGCATGCTGAAGCCTGGTGTCCATTGCCTCAATTTTTCTCTGCCATTCTTTAGTCTACCACTAGATCATTGTCATGACTATCACACAAATACACACATGCGCATGTGTCAGAGTATGTATTTACTATTTTCATTACTTTGCTTTCATATTCTGATCATACTGTGGTGGGGATTTATCATCAGAGAGAGGCATGTCCTGTCCACTCAACTGATAAAGTGTGAAACACATAGCCAGGTGTGGTGGTGCGTGCCTGCAATTTAGCAGGCAGAGGCAGGAGGATCACCGCTAGTGTGAAGCCAGCCTGGTCGACCTAGTAAGTTCTAGGCTAGCTAGGTGTCTTAGTCAGGGTTTCTATTCCTGCATAAACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCAGCTTACACTTCCATACTTTGTTCATCACCAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCTTTACTGGCTTGCCTCACCTGGCTTGCTCAGCCTGCTTTCTTATAGAACCAAGACTACCAGCCCAGAGATGGTCCCACCCACAAGGGGCCTTTCCCCCTTGATCACTAATTGAGAAAATGCCTTACAGTTGGATCTCATGGAGGCATTTCCTCAACTGAAGCTCCTTTCTCTGTGATAACCCCAGCTGTGTCAAGTTGACACAAAACTAGCCAGTACACTAGGACAACATTGTGAGATCCTGATCTCCAACTGTCCTTCCAAAGTAGAAACACAGAGGGCTTTAAAATGGGTTCCCACCTGCCTTTGCGTGTTTCGTTGGCCTGAGCCATGGCTAAAGCTGCCTCTTTGGTTTAG
Seq C2 exon
GCTTGGGATAATGACAAAGTTGTACATCCTGAACCCCAAAGCCGTGAGTGTCATTGAGCTGTATGGCATCCTGGATCCCACCACTCGAGACTGGACAGATGGGGTGCTGTCGAACATCTTCCGGGAGATCAACAGGCCGACCGACAAGAAGGAACGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011:ENSMUST00000141137:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(17.4=60.0)
A:
NA
C2:
PF077289=AAA_5=FE(38.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types