HsaINT0050044 @ hg19
Intron Retention
Gene
ENSG00000007174 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:2953]
Coordinates
chr17:11543587-11548016:+
Coord C1 exon
chr17:11543587-11543701
Coord A exon
chr17:11543702-11547947
Coord C2 exon
chr17:11547948-11548016
Length
4246 bp
Sequences
Splice sites
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
3' ss Seq
TTTCTCTTTTGTACGAGTAGTTG
3' ss Score
3.08
Exon sequences
Seq C1 exon
GGTTCTCCCCGGTGCACAAGAACATGCCCACCGTGGCTGGCGGCCTCCGCTGGGCACAGGAGCTGAGGCAGCGCATCCAGGGTCCTTTCAGCAACTTTGGACGCATCACACACCC
Seq A exon
GTGAGTATTGTGTTCCTGAAAGACAGGCTTGTCTTGGGCTGCTGTTCCTGCTCTAGAATCTGAGTGTTGTAGAAATGCAACCTGCTTAACGAAGGCCAGAAAATCATCTTCCTTTCTTTCCATTTCCAGCAAGGGATTAGACACCTATTGGCAAAACAGTCATGATATTGATGCATTTGGACTGAAGGGCAGGGCCCTTGGTGTTAAGTGCTGTAACTGGCTGACTCATTTTGCTCTGGGGGATTCATTTCTGGAGGACAGTGAGCCAGGGATTTTAAGCTCTGTGGAGTTCTTCCACACGTCTCCCTTTGACATCATGTCTCCTTGCTGCTGAGGCCACTGGAAAGTAATGAAGCCCAGTGTTTCCTCAAGTGCAGTATGAGGTCTCTGTCCATCAGGATAACTCTGGAAAACCTGTTAAAGATGCACATTCCAGGGCCTCACCTGTCACTGGCTGAATCTGAATCTGGTGTGGGCTGTGAATCTGCCCCTTCAGCAAGCTCCTCCTGTGATTCTGACGGTGACCAGGTTTGGAAACCCTCAGCTTGCTTCATAGCTGAGGTTAGAAGCTGAGATAGAAGCAACTCAGCTGCTAATTGTGATGTTGTGTTTAAGACGCTGGCTGAGGAAAGGCAGTCTTTCTCTGATACCTCTTTCTAAAAGACTTAATCTTGCTGACAGCACACAGGTTTTGGAAAACACAACAGAAGGAAAAGAATCAAACTCTGGCCATTGGACTCACAGGCTTTTTGGAGTTAGGAAGAGCCTTAGAGACCCTCTGGTCTGGCCCAAGTGGGAAGACTCAACACCATCAGAGGCCAGACAAATGGATGGCCAGGATGGGGTCTGCAGGGGGCCACCAGCACCCCACTCCAGCATTGCCAAGCAGAAAAGCAGACCCAATGTGAGCAATCTCCTGACTGTTGGAGATAAGCTGGAAACTGGATTTTAGAGTTGGACATCCAATTTTCCAATGATCAAGGATTCCATTTTTTCTCAAACTCTGTGCAGAACTAACAAAGCATGCCTGTGAGGCAGGTCTGCCCAGCGGGTGACCCATTTGCAGCATCTGCTTGGGTGTGGGCGAGATCTTTATTTTCAGATGAAGAAATGGAGGAAATGAAGAGAGAAGGGAGGTGACTTGCCCAAGGTCCTAGAGACAGCCAAAGAAAGAACTGGAAGAAATGCCTGATTCTCCAGGCTCCTAATCCAGAATGCTTCCCGGGGACCCCCCAGCCCTGGAAGTTTGGCGGGGAGTAGATCTGAGCCCTCATGCATCTCAATCACGCAGCAGAAGGCAGAAGGGAGAAGATAGGTGAATGGGGTGGGGAGGGGTGCCAGGGCTGCCCCTAGAATGTGGACTGCCACAGCTGTCACAGGTCTGGTTCCCAGGAAGCAGACCTATGATGTGTGTGCAGGAATTTATAGAGATCCTTTCAGGAACAGCACTCATGAGGAAGGGAGGGGAAACAGATCGGGCAGAGAAAGAAGTTGAGCTGCTGAGCTGCAAGAAAGTTGCAATGGGGGTCTCAGCTGGTCCTCCAGGGAGTTTGGGCCCTTCAGAGCTGTTCTGCCTCCGTACCCCTACATCAGCTGGTAGGATGTGGGCTTTCCTGGGGAGGGGCGTGACCTTTGGGTGAGGCAGCTCTCTCTGGCCAAGGCTGCTCCCAAAGAGGGAGGCAGCGGTACTTCTGCAGCAGCCAACACTCCTGGCTGGAGGGGACAGGGCGAGGCAGGGGTTGAAGCAGGAAGGTTTGGAGGTGTACCAGGGCCTGGTCCCAAGAGGCGATCTGGAAGGCACACAACAGAGACCTCTATAATTCCCGTGAAAACTCCCCCTTGTTTTAAAAATGAATTCAAATGTGTATTATGGGCCGGGCATGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCCCCTGAGGTCAGGAGTTTGCAACCATCCTGGCCAACATGGTGAAACCCATCTCTACTAAAAATACAAACAATTAGCCAGGTGTGGTGGGGGCAGGGGGCGGGGGGCGCCTGTAATCCCAGCTACTCAGGACGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATTGCGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCATCTCAAAAAAAAAGTGTATTCTATTCTATAATAGGTATTGATTGGTTATTGAAAATGTTTTAGATTCCTCACCATGAAGTGACATGGGAACTGCAGGAATTTCACTGTGCTTATTCCTGTGACTTCCCAGACCCACTCGGCCACACGCCCACGTGAGAAGCCTCACTCTGCTCTGGCCTCATTCTTTTCTAGATACAAAACTGAGACCCGGGGTTGGGGCCTGTGGGGCTTGTGGAAATCACACAGCTTGGCAAGGGAAAGCGCCCATTCGGGCTGGAGCATATTCTACCTCTCCTTGCTGCCTGGCAGATGCATCTGCTCTTTCATCACAAACGTGGACTGAGTAATCAGGGGGAAAAAAAAACGCCAGCAAATTCATTGCTTTCTCTGCAGGCGCTAGGGCTTCTGTGGAAAGCTCGAGGGATCTGATGAAGAAATCCTATGTTGGTTTAAAGAGCAGATGGATTTTAAGGAATCTCTGCAGTAAGCTGCCTCATTTTGCCAGCAGGTCAAATAGAAACAAACCACCACATAGTTAGTGTGAAGATTTTGAAGAATTAAAGATACTTCACCAATTTCTTCCAGGACTGGACTTTCATTAGTGTTGTGGGAAGTGTCAAAACCAGTTGAGGGTAACCGTACCTCGAGCCACACTCTCTTCCGTGGTCCTTAGCATTCCTGCAGAAGCCTCCATTTGTGTGTGCACACTTGTGTTTACACATGTTATATGTACGTCCATGTGCACTTTCATGTATGTGTATTACATGTGCACATGTTTCAGGGGTAAGAGCTGGGAGGGACCCTCATGTAAAAACGTGAAGAAGTGGTAGTGTTTCGGATCGCGTGTTCTAGATGGATTTCAGAAAAGGGGAAACATATATTTAAATATATAAAAAACATGTTAATATATCTGTACCTATATAGATATTTACCTGGCATATAGTGTTATAGACAATCATGTATTACTTCACAATGGGGTTATGTTCTGAGAAATATATCCTTAGGCAATTTCATCATTATGTGAACATCATAGAGTGTATTTACACAAACCTATGTCTGTGGTCTAGAGTATTGTTCCTAGGCTACAAATGCCCTATGGTCTAGCTTAGCCTAGGAGCAATACGCTCTATGATCAACACGCTCTATGATCAATATGCTCTATGATCAATACGTTCTATGATCAATACGCTTTATGGTCTAGCTTAGCCTATGATCAATACACTCTATGATCAATACACTCTATGGTCCAGTGTATTGCTCCCAGGCTACAAACCTGTGCAGCGAGTGACTGTCCTGAGTATTGCAGGCAATTGTAGCACTATACTAAGTGTTTGTGTATCTAAACATATCTGAACATAGAAAAAGTACAGCAAAAAATAAGGCATAAAAGATTTAAAAAATGGTACGCTTGTGTAGGACACTTACCATGAATGGAGCTCACAGGACTGGAAGTTGCTGTAGGTGAGTCAGTGAGTGGGTGGTGAGTGAATGCGAAGGCCTAGGACATTACTGTACACTTTTATACGATTGGCAGCACAGTAGGTTTGTTTACACCAGCATCACCACAGCCATGGGAGTAATGCGTTGCACCATGTCAACAGGCAATAGGAATTTTTCAGCGTCATTAAAATCTTATGGGACCGCAGTCACATACGTGTATATATGTTGACCAAAATGCCATTATGTGGTGCATGACTGTATATAACATTGATGGTCTTAAATACAGAAAATTACAGCACCTAGAATTTTTTCATATCTCAATTTCCCTTTTATTCAGATTTTTGAAGGACCTCACATACCTTGTGTGTGACTGGCTCAGCTAGGTGAGGGTGCTGGTGGAGCTGCGGGCAGGAAAGGTTATGAGAGCTCTGACACTTGCGGAGCTGCCTGCGTTTCAGGAAGTGCAGATGCCCTCTAGTGGCCAGAGTAAGATGTTCGCGAAGAAGAAAGGCTCTTTCAGGGCTGTTTGGAAACGAGCCAAGGAGCTATTCACGCTCTTCTTTGGAGACTGCAGTTTGTTCCTCGGATTATTACTTTAACTTCTTCTAATTCTGTGTCACTTTTTCTCTTTTGTACGAGTAG
Seq C2 exon
TTGCATGGAATCTGCAGAAGGAAAGCGAATGCAACAAAAATATGAAGATATGCTGTCATTGCTAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-DNAH9:NM_001372:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=NA C2=0.083
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(6.5=100)
A:
NA
C2:
PF083857=DHC_N1=FE(4.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)