GgaINT0127340 @ galGal4
Intron Retention
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1043607-1045741:+
Coord C1 exon
chr18:1043607-1043767
Coord A exon
chr18:1043768-1045672
Coord C2 exon
chr18:1045673-1045741
Length
1905 bp
Sequences
Splice sites
5' ss Seq
CCCGTGCGT
5' ss Score
6.27
3' ss Seq
TTTGTCTGTTTTGCTACCAGCTG
3' ss Score
8.36
Exon sequences
Seq C1 exon
TAGAAGGGCAGTGTTCAGTCAAATGCAGTTTCCGTGTTCCCCCCAGGATTCCCTCCTGTGCATAAGAACATGCCGCTGGTAGCTGGAGCGCTGCGCTGGGCTCAGGAGCTGCGGGCGCGGATCCAGGCGCAGTTTGGTCCCTTCAGACACATCACACACCC
Seq A exon
GTGCGTGGCTGTGCCAGATAAGTTGTTTTATGACTACCTTGGTATCTTTAATCAATCTGTTTTTCTTTCTGTATTGAACATCATCCAGTGCTGATTGCTGAAATATTTCTTAGTCAAAGAGGTGTGAAGTGATAGCACTGGCTCTTTTCAGCTTGCCAGCTGTTGGTTTTTAAGGAACTCGTTAGGTGAATTTGTTTGGGAGTGGTTAAGAGGCATGGTGGGATACTGCATGGGCTTTTCAGCTGTGGTTCTAGGTTGCAATTGCAAGACACGTTGGAACGTCTTCCCCTACAACCCCACTCAGTGTGTGCTCCAGAACCTCCCTGGGAGCTGCTCAGGCCTAGACTGCAAGCCCCAGTTCTGGTATCACCCAGTGGAGGGCAGAGAGATGCTGGCTGGACTCAGCTGGGCTGGTGGAGATGAGTTTCAGGTTGGTGAACACACAAGGACTTGTCCTGGGCACTGACAGAAAACAACTTGCTCAGCATCAAACAAGGGAGCGATCTCACAAAACCAAGGGAAGAAACTGTGCTGAGATACTTTTCACCCCAAAGTTTGTTATTGTGGGTCTTGGAGAGAGGTGGTCTCACACTTGCAGCTGCCAGACCTAGTGGCACTACTTGTAGACTTCAGCATTCCTGAAACAATGTGTGAAAGCCCCATAAGTAAAGCTATGTTGGACCCAGGATAATTGAAGGTACCCTGGGGATTGTGTGCTGTAGCTCACCGGAACAGCTTTACTTGTGCTAGAGGCTATTCTGAGTAAATGAATCCAGGTTTTTAATGTGCTTATCCAAAATAAGCCATCTCCATGACTGTCCAGTATTTGTGGTCTTCTCTCACCTTGTATTACCATTATGTAAGTGCCTTTAAGTGCAAGTCATTCTGCAGCAATAAAGACATCTCTGCGGTGAGACAGGCCCTTGGCCCATCCCCAGCACAGCGCCCAAGTTAGCACACACATCTTGTTTGAATCCAAATGGCCAAGTTTGTAATCCATGAAGAAGGACCCAGATCTGCATTTCACATTGATTTTCTTTCCTCTGTTTGGAGTGGTTGATAACATGCCTGCAGCAGTGGTGGTGTGGCTCTGTTTCCTACAATGCAACTTGAAAGAAGGAAAGGATTAAAGAAGAAAGAAGTTGGTTTTGCTGGGGCTTGGTCAGTGCTTGTCCAGCAGTGACCTCTCAAGTGCTCCCTGTGCACTCCGCTGAACTTGCGGTAGATACCGATGTCCTTTGAGCTCTCTGGGAATTTGCTGGGTTTTAAATGAATCTGTTTTTTATCAAAGTATTCTCCAAAATCAACAACTGTTTTCAAGAAGCCTTGAACCTGGGCTAAAATTGTTATCAGCATTACTTTGGCTGCCTCCATGGGTGGCTGGGGTTCTGCCTCCTGCACTGTGGGGTGCTCTTCCCCACTCTGATGGTTTGTGGGGCACAAATCTGGCACTACAAATAGCTATGTCCAACATGAGCTGCGTGCTGCTTCTTTCTGAGCCTCTTTGGTCTTAGAAAGTGCTGGCTGGTAAACAGAAAGTTGCCATGCTCTGTGCAAGTGCAGCATGCGAAAATGGGAGTGCTGCACATGTTAAATAGGCCAGCCTTCCTCCAGTAGCATTGATTCCTTCTTCCCCTCTGATGTGTGGTTCCTGTTTTGCAGTTTGTCATACAAACGCATGAGAGGGGCTGTCCAACCCCCCCCCTCAACTTTTTGTGCAGCAAAACACTTCTGGGTGATGTGGTGGGGTGAAATGCAAGGTCCTCAGCTGGCTAGAGTCTGTCCTACAAACTGAAGGATGAACTTAGGATCTTAGTGAACTTACGATCTTAGATCTTAGAGTAAATACAGCCTACAGTCTTGCAGAACTACATGTAATGCTAAGTTTGTCTGTTTTGCTACCAG
Seq C2 exon
CTGCCTGGACTCTCCTGAAGGAAGAAGGGTGTTGGAGAGGTATGAAGAAATGCTCCAGTTGCTCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111:ENSGALT00000001676:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PU(16.0=96.8)
A:
NA
C2:
PF083857=DHC_N1=FE(12.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGAAGGGCAGTGTTCAGTCA
R:
CTGTCGAGCAACTGGAGCATT
Band lengths:
230-2135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]