DreINT0058267 @ danRer10
Intron Retention
Gene
ENSDARG00000103383 | dnah9
Description
dynein, axonemal, heavy chain 9 [Source:ZFIN;Acc:ZDB-GENE-020925-1]
Coordinates
chr12:188375-188640:-
Coord C1 exon
chr12:188526-188640
Coord A exon
chr12:188444-188525
Coord C2 exon
chr12:188375-188443
Length
82 bp
Sequences
Splice sites
5' ss Seq
CCCGTAAAT
5' ss Score
-3.11
3' ss Seq
CTTTATATGTGTTATTATAGATG
3' ss Score
6.93
Exon sequences
Seq C1 exon
GTTATTCTCCTGTCTCTAAGAACATGCCTGCGGTTTCTGGAGGACTGAAGTTTGTCCAGGAATTGCAGGAACGCATACAGACTCTTTACAATAACTTCAGATTCATCAACCACCC
Seq A exon
GTAAATATCTGATGTCTTGAGTCTATTGGAGACTATTGGAGTTTTCTCTATTCAAATAAACTCTTTATATGTGTTATTATAG
Seq C2 exon
ATGTATGGAGTCTGTGGATGCAAAGGAGATGATGCAGAAATATGATGAGCTCATGCGGCAGCTCAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103383:ENSDART00000161178:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(6.5=100)
A:
NA
C2:
PF083857=DHC_N1=FE(4.0=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAACATGCCTGCGGTTTCT
R:
TGTTTGAGCTGCCGCATGAG
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]