HsaINT1011590 @ hg38
Intron Retention
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11640270-11644699:+
Coord C1 exon
chr17:11640270-11640384
Coord A exon
chr17:11640385-11644630
Coord C2 exon
chr17:11644631-11644699
Length
4246 bp
Sequences
Splice sites
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
3' ss Seq
TTTCTCTTTTGTACGAGTAGTTG
3' ss Score
3.08
Exon sequences
Seq C1 exon
GGTTCTCCCCGGTGCACAAGAACATGCCCACCGTGGCTGGCGGCCTCCGCTGGGCACAGGAGCTGAGGCAGCGCATCCAGGGTCCTTTCAGCAACTTTGGACGCATCACACACCC
Seq A exon
GTGAGTATTGTGTTCCTGAAAGACAGGCTTGTCTTGGGCTGCTGTTCCTGCTCTAGAATCTGAGTGTTGTAGAAATGCAACCTGCTTAACGAAGGCCAGAAAATCATCTTCCTTTCTTTCCATTTCCAGCAAGGGATTAGACACCTATTGGCAAAACAGTCATGATATTGATGCATTTGGACTGAAGGGCAGGGCCCTTGGTGTTAAGTGCTGTAACTGGCTGACTCATTTTGCTCTGGGGGATTCATTTCTGGAGGACAGTGAGCCAGGGATTTTAAGCTCTGTGGAGTTCTTCCACACGTCTCCCTTTGACATCATGTCTCCTTGCTGCTGAGGCCACTGGAAAGTAATGAAGCCCAGTGTTTCCTCAAGTGCAGTATGAGGTCTCTGTCCATCAGGATAACTCTGGAAAACCTGTTAAAGATGCACATTCCAGGGCCTCACCTGTCACTGGCTGAATCTGAATCTGGTGTGGGCTGTGAATCTGCCCCTTCAGCAAGCTCCTCCTGTGATTCTGACGGTGACCAGGTTTGGAAACCCTCAGCTTGCTTCATAGCTGAGGTTAGAAGCTGAGATAGAAGCAACTCAGCTGCTAATTGTGATGTTGTGTTTAAGACGCTGGCTGAGGAAAGGCAGTCTTTCTCTGATACCTCTTTCTAAAAGACTTAATCTTGCTGACAGCACACAGGTTTTGGAAAACACAACAGAAGGAAAAGAATCAAACTCTGGCCATTGGACTCACAGGCTTTTTGGAGTTAGGAAGAGCCTTAGAGACCCTCTGGTCTGGCCCAAGTGGGAAGACTCAACACCATCAGAGGCCAGACAAATGGATGGCCAGGATGGGGTCTGCAGGGGGCCACCAGCACCCCACTCCAGCATTGCCAAGCAGAAAAGCAGACCCAATGTGAGCAATCTCCTGACTGTTGGAGATAAGCTGGAAACTGGATTTTAGAGTTGGACATCCAATTTTCCAATGATCAAGGATTCCATTTTTTCTCAAACTCTGTGCAGAACTAACAAAGCATGCCTGTGAGGCAGGTCTGCCCAGCGGGTGACCCATTTGCAGCATCTGCTTGGGTGTGGGCGAGATCTTTATTTTCAGATGAAGAAATGGAGGAAATGAAGAGAGAAGGGAGGTGACTTGCCCAAGGTCCTAGAGACAGCCAAAGAAAGAACTGGAAGAAATGCCTGATTCTCCAGGCTCCTAATCCAGAATGCTTCCCGGGGACCCCCCAGCCCTGGAAGTTTGGCGGGGAGTAGATCTGAGCCCTCATGCATCTCAATCACGCAGCAGAAGGCAGAAGGGAGAAGATAGGTGAATGGGGTGGGGAGGGGTGCCAGGGCTGCCCCTAGAATGTGGACTGCCACAGCTGTCACAGGTCTGGTTCCCAGGAAGCAGACCTATGATGTGTGTGCAGGAATTTATAGAGATCCTTTCAGGAACAGCACTCATGAGGAAGGGAGGGGAAACAGATCGGGCAGAGAAAGAAGTTGAGCTGCTGAGCTGCAAGAAAGTTGCAATGGGGGTCTCAGCTGGTCCTCCAGGGAGTTTGGGCCCTTCAGAGCTGTTCTGCCTCCGTACCCCTACATCAGCTGGTAGGATGTGGGCTTTCCTGGGGAGGGGCGTGACCTTTGGGTGAGGCAGCTCTCTCTGGCCAAGGCTGCTCCCAAAGAGGGAGGCAGCGGTACTTCTGCAGCAGCCAACACTCCTGGCTGGAGGGGACAGGGCGAGGCAGGGGTTGAAGCAGGAAGGTTTGGAGGTGTACCAGGGCCTGGTCCCAAGAGGCGATCTGGAAGGCACACAACAGAGACCTCTATAATTCCCGTGAAAACTCCCCCTTGTTTTAAAAATGAATTCAAATGTGTATTATGGGCCGGGCATGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCCCCTGAGGTCAGGAGTTTGCAACCATCCTGGCCAACATGGTGAAACCCATCTCTACTAAAAATACAAACAATTAGCCAGGTGTGGTGGGGGCAGGGGGCGGGGGGCGCCTGTAATCCCAGCTACTCAGGACGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATTGCGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCATCTCAAAAAAAAAGTGTATTCTATTCTATAATAGGTATTGATTGGTTATTGAAAATGTTTTAGATTCCTCACCATGAAGTGACATGGGAACTGCAGGAATTTCACTGTGCTTATTCCTGTGACTTCCCAGACCCACTCGGCCACACGCCCACGTGAGAAGCCTCACTCTGCTCTGGCCTCATTCTTTTCTAGATACAAAACTGAGACCCGGGGTTGGGGCCTGTGGGGCTTGTGGAAATCACACAGCTTGGCAAGGGAAAGCGCCCATTCGGGCTGGAGCATATTCTACCTCTCCTTGCTGCCTGGCAGATGCATCTGCTCTTTCATCACAAACGTGGACTGAGTAATCAGGGGGAAAAAAAAACGCCAGCAAATTCATTGCTTTCTCTGCAGGCGCTAGGGCTTCTGTGGAAAGCTCGAGGGATCTGATGAAGAAATCCTATGTTGGTTTAAAGAGCAGATGGATTTTAAGGAATCTCTGCAGTAAGCTGCCTCATTTTGCCAGCAGGTCAAATAGAAACAAACCACCACATAGTTAGTGTGAAGATTTTGAAGAATTAAAGATACTTCACCAATTTCTTCCAGGACTGGACTTTCATTAGTGTTGTGGGAAGTGTCAAAACCAGTTGAGGGTAACCGTACCTCGAGCCACACTCTCTTCCGTGGTCCTTAGCATTCCTGCAGAAGCCTCCATTTGTGTGTGCACACTTGTGTTTACACATGTTATATGTACGTCCATGTGCACTTTCATGTATGTGTATTACATGTGCACATGTTTCAGGGGTAAGAGCTGGGAGGGACCCTCATGTAAAAACGTGAAGAAGTGGTAGTGTTTCGGATCGCGTGTTCTAGATGGATTTCAGAAAAGGGGAAACATATATTTAAATATATAAAAAACATGTTAATATATCTGTACCTATATAGATATTTACCTGGCATATAGTGTTATAGACAATCATGTATTACTTCACAATGGGGTTATGTTCTGAGAAATATATCCTTAGGCAATTTCATCATTATGTGAACATCATAGAGTGTATTTACACAAACCTATGTCTGTGGTCTAGAGTATTGTTCCTAGGCTACAAATGCCCTATGGTCTAGCTTAGCCTAGGAGCAATACGCTCTATGATCAACACGCTCTATGATCAATATGCTCTATGATCAATACGTTCTATGATCAATACGCTTTATGGTCTAGCTTAGCCTATGATCAATACACTCTATGATCAATACACTCTATGGTCCAGTGTATTGCTCCCAGGCTACAAACCTGTGCAGCGAGTGACTGTCCTGAGTATTGCAGGCAATTGTAGCACTATACTAAGTGTTTGTGTATCTAAACATATCTGAACATAGAAAAAGTACAGCAAAAAATAAGGCATAAAAGATTTAAAAAATGGTACGCTTGTGTAGGACACTTACCATGAATGGAGCTCACAGGACTGGAAGTTGCTGTAGGTGAGTCAGTGAGTGGGTGGTGAGTGAATGCGAAGGCCTAGGACATTACTGTACACTTTTATACGATTGGCAGCACAGTAGGTTTGTTTACACCAGCATCACCACAGCCATGGGAGTAATGCGTTGCACCATGTCAACAGGCAATAGGAATTTTTCAGCGTCATTAAAATCTTATGGGACCGCAGTCACATACGTGTATATATGTTGACCAAAATGCCATTATGTGGTGCATGACTGTATATAACATTGATGGTCTTAAATACAGAAAATTACAGCACCTAGAATTTTTTCATATCTCAATTTCCCTTTTATTCAGATTTTTGAAGGACCTCACATACCTTGTGTGTGACTGGCTCAGCTAGGTGAGGGTGCTGGTGGAGCTGCGGGCAGGAAAGGTTATGAGAGCTCTGACACTTGCGGAGCTGCCTGCGTTTCAGGAAGTGCAGATGCCCTCTAGTGGCCAGAGTAAGATGTTCGCGAAGAAGAAAGGCTCTTTCAGGGCTGTTTGGAAACGAGCCAAGGAGCTATTCACGCTCTTCTTTGGAGACTGCAGTTTGTTCCTCGGATTATTACTTTAACTTCTTCTAATTCTGTGTCACTTTTTCTCTTTTGTACGAGTAG
Seq C2 exon
TTGCATGGAATCTGCAGAAGGAAAGCGAATGCAACAAAAATATGAAGATATGCTGTCATTGCTAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174:ENST00000262442:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=NA C2=0.083
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(6.5=100)
A:
NA
C2:
PF083857=DHC_N1=FE(4.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains