GgaINT0127340 @ galGal3
Intron Retention
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1025580-1027668:+
Coord C1 exon
chr18:1025580-1025694
Coord A exon
chr18:1025695-1027599
Coord C2 exon
chr18:1027600-1027668
Length
1905 bp
Sequences
Splice sites
5' ss Seq
CCCGTGCGT
5' ss Score
6.27
3' ss Seq
TTTGTCTGTTTTGCTACCAGCTG
3' ss Score
8.36
Exon sequences
Seq C1 exon
GATTCCCTCCTGTGCATAAGAACATGCCGCTGGTAGCTGGAGCGCTGCGCTGGGCTCAGGAGCTGCGGGCGCGGATCCAGGCGCAGTTTGGTCCCTTCAGACACATCACACACCC
Seq A exon
GTGCGTGGCTGTGCCAGATAAGTTGTTTTATGACTACCTTGGTATCTTTAATCAATCTGTTTTTCTTTCTGTATTGAACATCATCCAGTGCTGATTGCTGAAATATTTCTTAGTCAAAGAGGTGTGAAGTGATAGCACTGGCTCTTTTCAGCTTGCCAGCTGTTGGTTTTTAAGGAACTCGTTAGGTGAATTTGTTTGGGAGTGGTTAAGAGGCATGGTGGGATACTGCATGGGCTTTTCAGCTGTGGTTCTAGGTTGCAATTGCAAGACACGTTGGAACGTCTTCCCCTACAACCCCACTCAGTGTGTGCTCCAGAACCTCCCTGGGAGCTGCTCAGGCCTAGACTGCAAGCCCCAGTTCTGGTATCACCCAGTGGAGGGCAGAGAGATGCTGGCTGGACTCAGCTGGGCTGGTGGAGATGAGTTTCAGGTTGGTGAACACACAAGGACTTGTCCTGGGCACTGACAGAAAACAACTTGCTCAGCATCAAACAAGGGAGCGATCTCACAAAACCAAGGGAAGAAACTGTGCTGAGATACTTTTCACCCCAAAGTTTGTTATTGTGGGTCTTGGAGAGAGGTGGTCTCACACTTGCAGCTGCCAGACCTAGTGGCACTACTTGTAGACTTCAGCATTCCTGAAACAATGTGTGAAAGCCCCATAAGTAAAGCTATGTTGGACCCAGGATAATTGAAGGTACCCTGGGGATTGTGTGCTGTAGCTCACCGGAACAGCTTTACTTGTGCTAGAGGCTATTCTGAGTAAATGAATCCAGGTTTTTAATGTGCTTATCCAAAATAAGCCATCTCCATGACTGTCCAGTATTTGTGGTCTTCTCTCACCTTGTATTACCATTATGTAAGTGCCTTTAAGTGCAAGTCATTCTGCAGCAATAAAGACATCTCTGCGGTGAGACAGGCCCTTGGCCCATCCCCAGCACAGCGCCCAAGTTAGCACACACATCTTGTTTGAATCCAAATGGCCAAGTTTGTAATCCATGAAGAAGGACCCAGATCTGCATTTCACATTGATTTTCTTTCCTCTGTTTGGAGTGGTTGATAACATGCCTGCAGCAGTGGTGGTGTGGCTCTGTTTCCTACAATGCAACTTGAAAGAAGGAAAGGATTAAAGAAGAAAGAAGTTGGTTTTGCTGGGGCTTGGTCAGTGCTTGTCCAGCAGTGACCTCTCAAGTGCTCCCTGTGCACTCCGCTGAACTTGCGGTAGATACCGATGTCCTTTGAGCTCTCTGGGAATTTGCTGGGTTTTAAATGAATCTGTTTTTTATCAAAGTATTCTCCAAAATCAACAACTGTTTTCAAGAAGCCTTGAACCTGGGCTAAAATTGTTATCAGCATTACTTTGGCTGCCTCCATGGGTGGCTGGGGTTCTGCCTCCTGCACTGTGGGGTGCTCTTCCCCACTCTGATGGTTTGTGGGGCACAAATCTGGCACTACAAATAGCTATGTCCAACATGAGCTGCGTGCTGCTTCTTTCTGAGCCTCTTTGGTCTTAGAAAGTGCTGGCTGGTAAACAGAAAGTTGCCATGCTCTGTGCAAGTGCAGCATGCGAAAATGGGAGTGCTGCACATGTTAAATAGGCCAGCCTTCCTCCAGTAGCATTGATTCCTTCTTCCCCTCTGATGTGTGGTTCCTGTTTTGCAGTTTGTCATACAAACGCATGAGAGGGGCTGTCCAACCCCCCCCCTCAACTTTTTGTGCAGCAAAACACTTCTGGGTGATGTGGTGGGGTGAAATGCAAGGTCCTCAGCTGGCTAGAGTCTGTCCTACAAACTGAAGGATGAACTTAGGATCTTAGTGAACTTACGATCTTAGATCTTAGAGTAAATACAGCCTACAGTCTTGCAGAACTACATGTAATGCTAAGTTTGTCTGTTTTGCTACCAG
Seq C2 exon
CTGCCTGGACTCTCCTGAAGGAAGAAGGGTGTTGGAGAGGTATGAAGAAATGCTCCAGTTGCTCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111:ENSGALT00000039398:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(6.5=100)
A:
NA
C2:
PF083857=DHC_N1=FE(4.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCCTCCTGTGCATAAGAACA
R:
CTGTCGAGCAACTGGAGCATT
Band lengths:
182-2087
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]