MmuINT0051203 @ mm9
Intron Retention
Gene
ENSMUSG00000056752 | Dnahc9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65935328-65938729:-
Coord C1 exon
chr11:65938615-65938729
Coord A exon
chr11:65935397-65938614
Coord C2 exon
chr11:65935328-65935396
Length
3218 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
CTTTTCTTGTGAATTGATAGGTA
3' ss Score
7.02
Exon sequences
Seq C1 exon
GATTCTCCCCCGTGCACAAGAACATGCCCACTATGGCTGGCGGCATCTGCTGGGCACAGGAACTGAGGCAGCGCGTCAAGGGTCCCTTTGGCAACTTCAAAAACATACCACATCT
Seq A exon
GTGAGTATCTGATTCTTGAGAGGCACCTAAGACACACACACACACACACACACACACACACACACACACACGATCTGCCTGTTGTTTTATGTTCAACCCCTCTGTAGGCTCTGTCACCCCAGTCATATATGTGGGCTGAGATATGGGTCCTTTGGGGTTAACTTAAGCTTAGCCCCATAGATGATTTCCAGAGGACAACTAATCAGGGGCCTCACATTCTATGGAGGCCCTCAACATTACTTCTTGGGAAAAGAATTCTTTACATCCCTGAGGCAGTTGGGAAATAATGACTGCTTCTCAAATGTGCTGTGAAGATTGTGTTGGAAATGTAGCTTCTTGGCCTCCCCAGTCAAGTCTAAATCTGTGCTGGGACTCTGTGTCTCTGGCTTGGTGGGGAAATATGAGCCTGCTTCGTGACTGGTCCTAGAAGCTGAGCGTCTTAGAGGACTCCCGGCTGCTAGCAGTGCATGAGAGGAAACATTGGCTTGGGATGCTTCCTGCCCGGGGGCAGGCAGCCTTCCTCTGATCCCTCTTTGTAGGATCCCTCGATCCTGTTCAAAGCCCTTGGCATTGGCGAGTACAACAAAGGCAAAGGATTTGGAAGCTGACTGTTGGCATTGCAGCTTTCCTTAGAGTCGGGAATGTCCACAGAGACCCTGGGCTCAGGTAGCAAGATTAAATGTCTTTCAAGATGTGAGACAGAGGCGACTGTAGGGTTCAGTCACTACCTCACTCCTGGGTCATGAGTCAGACATGAAGTCTCAACATGAGCAGTTGAAATTGGAGAGGAGCTGATCTCTTCTCTGTTCTGGGTAAGCTTTCCACGTTGCATATGGAGAAACCAGGGAGAAAGAAGGGAAGTGAGTCCCATCCCCCTGTCCCAGAGACAGCCAAGAAATAACTGAGAGAGCTTCCAGTTACAGTTCCTTTCAATACTTCCTAGACATAGAGAATTTGACCAGGAGTAGGGCTGAGGACCCACACCTCACAGACATGCCCCCTGTAAAGCAATAAGGACCCTTGGTGGGGAGGTTAGATGACCCTTTTACAGGAATTGCATATCAGTTATCCTACGTAGCAGATATCCTGCATATCAAATATTTACATTATGATTCATAACAACAATAAAATTACAATAATGAAGTAGGAAACATGAAAATATTTTTATGGTTTGGGGTGTGTGGGGATCACCACAACAGGAGGACCTATATTAAAGGGTCACAGCATTAGGAAGATAGAGAGTCACTGCCTTAGAGCCAAATACAGAAGACATGCAAGAAGGAGTCAAGGTTGCTTCCAGGCATAGGAACTGCATGGCTGTCATAGGTCTGGTTCTTAAGAAGCAGAGACAGCAAAGGATGCTCTTGGGAGCTAAAGGACAGAAGGAATAGGGCTGGCTGAGTAGTGGGTAGAATGAGCTGATGGTTGGTAGTATCAGAGGCTTCAGTGCATCCTGCAAGGAGCACAGCTCCTAAGAAGCACCCAGGCATGGAGTCCCCACCTCAGCTAATTTTTATCCCTGGGGTTTCACCATAAAGAACATGACTATATGCTAGATGGCTCTCGGTCCAATGCCCTCGTCTGGTTCTGTTGACGCCAGTGCACAGGCATGTACACATGCAAAACATTCATGCACATAAAATTAAAAACATGATAAAAAGAGAATGTAAAAAAAAAGAGAGAGAGAGAGAGAATGCTGTAGGTTTCTAGCAAAAAGTGAAATGGAAGCAACATTGCATTGCGTCTGAGGACCCCTCAGACCTACTAGGCAGCGTAGCCTGACACTTCGTGAAGTAAACCGTGTGCACCTTTGCCTCAGGCTCTCCAGATCCAAGTCTGAGACTTGTGAGGCCATTGTGAGGTCTATAGAAATCCTGCAGGATGTGGGGGAGATCGGGAATACGAGGTACAAGCCACCTGCCTGGTCCGGAGTACTCTGAGATACTGCTGCTCATTTAGCACCAAAGGGAACAAAGAAACCCAGTGCTTTCTCTGCAGGAGCGAGGAGGGTTCTGCGGACGGCTCTGGGGATCACATGAAGAGACCTGTGCTGGCATATGGAGAGAACGGATGTTAAGGATTTAGCAATAAGCTGCCTTGTTTTGCTAGCAGGACAAAGAACAGACTCCATACAGTTAGTGTGAAGGTATTTGAAAATTAAAGAGACTTCACCAGTTTTCCCCAGGAACTGGGCATTTATTTACGATAGCAGCCAGTGTCAAAAGCAGTGGGGAACACTGGCTAAGAGTATTGCAGGGTCGACTCTGTTCTCTTCTGTGGTCCTCAGCATCCAGGCAGGAGCCTCTGACATGCCTGTGAGAGAAAACGGTGTTTGTGGATGCTTTCTGCATGCAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACATTTTAGAAGGAGAGAGGTGGGTCAGGCCTCATGCAAACATGTCATAGAATAGCAATGTTTCTGAACAAGTGTCCTCCTAGTTAGATTTTAGAAACCCTTTGTTTGTACCTATCTAGGGAAAGGGGATCTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTACCTGTCTATCTACCTACCTACTGGTCATCATGTATCTATTACCTATATATTATTATATGAAGCATTGTGATAAGCACATATACATATAGGTAATGTTTTAAGGATGTTTTTCTTCATACACAGAAAACAACATCACCTAGAATTTTTCTTTAGTCCCTCAACTTTCTTTTTATTCATGTTTTGTGAAAATTCATCTACCTGGTGTATATATGACCGGCTTAGCCAGGACAGCAGTTGGTGGAAACACAGCAACAGACATCACACTGTCCCTTGCCTTTTGGGGTTCTGCCGGAATTTTAGAAAGTGTGGCTGCCCCCTAGTGGCCTGTGGAAGATGTTCAGGGAGGAGAATGCAATCTCTTTCAAGGCCTTTTGAAAACTAACCCAAAAGGCTGTTCCATCTCCGGTTTCTTTGTCTTTTGATATTGTTGTTTTATTTCTTGAGATGCACAAGATCCCTGTATTTGTCCCAGGGAGGCCTGGGACACATGATCCTGTTGCCTCAGGACCCCAATTATCAATACCTTCTCTGTAGCCTGTAGCCTTGATAGATGGTAATATTTTGGCCTTTTCTAATTGTATATCTTTTTCTCCCCTTTTCTTGTGAATTGATAG
Seq C2 exon
GTACTTGCAATCTGCTGAAGGAAAGCGAATGATACAAAAATACGAAGACTTGCTCTCCCTGCTAGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-Dnahc9:NM_001099633:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(6.5=100)
A:
NA
C2:
PF083857=DHC_N1=FE(4.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: