HsaINT0050058 @ hg19
Intron Retention
Gene
ENSG00000007174 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:2953]
Coordinates
chr17:11603048-11604564:+
Coord C1 exon
chr17:11603048-11603200
Coord A exon
chr17:11603201-11604438
Coord C2 exon
chr17:11604439-11604564
Length
1238 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
AACCTGAGTTGTTCTTTCAGGTA
3' ss Score
7.3
Exon sequences
Seq C1 exon
GTTCAACGTCACCTTTCCAAACTCTTTGACAACATGGCCAAGATGCGATTCCAGCTAGATGCCAGTGGGGAACCAACCAAGACAAGCCTCGGCATGTACAGCAAAGAAGAGGAGTATGTGGCTTTCAGTGAGCCCTGTGACTGCAGCGGGCAG
Seq A exon
GTAACACAGTAGCCCTTTCCCCTCCTTCTGCTTTTCTCTCTCAAATGCCTTCATTCAAATATGATCAGCATCAACTCTAGGAGGGCCTTTCTGACCTTGGTCCAGAGCTGCTGTCCATGCCCTCCAAGAGCCAGCTTCTTTGACTTGAACTGATGTTGGAGCAGCAGCTGGCGCCCTGCTTTCCTCTTTCAGGGAAGGACACATGTCAACATTCATATCTTTTCCTTAACCAAAGACCTGTGCAGAGGGAAATAAAATGCACATAAACAGCTACCCAAGTCAATGAGAAAAGGATTTTAAAATGATTAGCGGCACCAGGAGACGTCAACATGGCAACCCCTGGAGCATCCTCTGGGAGAATCTGGAACACTGACACCCTCCCTGGGAGAAAAATGTCCTTTTGTGGAACCAGCTGCTTTCCTGAGATGTCCCCTCTCTGCACAAATGTGTCTTAGTGTCACTTCCTCCCACAGCCTTCCCCTTGGAGAACAAACTACCACCGTGCTCCAGGAACTGCCTCCTCCAAATCTCCATGTCCAATGCAAGGGACACAAACCACGGGACCATTTACCCCTTAAGCCTCCTTCCCATCCATTAGCACCACCGATAAATATAAGCCTTTCTTTATTTATTTATCGTCTGAAATGATCCAGCAAAGCATTGCCCCTGGGGATTCTCATCTAGTGCCAAATAACAGCTGGGGTAAGGATATTTTACAGGGTTCCACCCTTATCACCTATATCTAAGAAAGCAATTCTAGTGCCAGAAAATAATCGCTTCTCAGTTATATGAGGGTGGCCCTGGGGTTTCATTCACAATATGTTCTTTCTGTAGACCCAGAAAGCATTGAGCTGGGGAATACAATCCTGGTTTGCGCTTCATACTCAGAGTGGACAAGGTCATGAGAAGCCACTGATTTATTTACACCCAGCTCAACCCAGATTTCTATTTCCTTGTATGAGCTCTGGGTGACAGCCCCCACCCCCTTAACCTGCTACTCTGTCCTGCATATTCCAAATGCACACATCAGCCTGCTGTTAATTAAGTCTGGGTCTCACTTATCACCATCCCGGATTACGTAAACAGCACATCTCTCTGCACCTTCTGGCAGCCACTTGGGGCTGTATACAATGTGTGGGCTCCCTTTCCTTCACTCCCTCAGACTGAGTGGAAGAAAATATGTAGGACTAACCAAAACTTCTCAGGCACCCAGTGTCTAACCTGAGTTGTTCTTTCAG
Seq C2 exon
GTAGAAATATGGCTGAACCATGTCCTTGGTCACATGAAGGCCACTGTGAGGCATGAGATGACAGAAGGTGTAACTGCCTATGAAGAAAAGCCGAGGGAGCAGTGGCTTTTTGACCACCCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-DNAH9:NM_001372:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.048
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(12.1=100)
A:
NA
C2:
PF083938=DHC_N2=PD(6.5=64.3)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACGTCACCTTTCCAAACTCT
R:
CTGGGTGGTCAAAAAGCCACT
Band lengths:
272-1510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)