BtaINT0050795 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31049561-31051654:+
Coord C1 exon
chr19:31049561-31049713
Coord A exon
chr19:31049714-31051528
Coord C2 exon
chr19:31051529-31051654
Length
1815 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACG
5' ss Score
10.52
3' ss Seq
ACCCCAAGCTCTTCTTCCAGGTA
3' ss Score
7.41
Exon sequences
Seq C1 exon
GTTCAACGCCACCTTTCCAAACTCTTTGACAATATGGCCAAGATGCAGTTCCAACTGGACGCCAGTGAGAAGCCAACCAAGACCAGCCTTGGCATGTACAGCAAGGAAGGAGAATATGTGGCCTTCAGCGAGCCCTGTGACTGCAGTGGGCAG
Seq A exon
GTAACGCATGCCTTGCTCTCTCAAGTGTCTGCAGTCAAGCATCAGCCTTCAGAATGGCGATTGTGACCTTGGACCAGAACTGCTGTCTGTGCCTGGGGCCTGCCCAGTCCTCTGACTTGAACCGACATCAGAGCAGCTTCCAGCGCCCACTTTCCTCTCCCTGGGAAGGACACATGTCAATACCTGTATATCTTCCTCACTCAAAGTCCTGTGCAGAGAGCAATAAAATGCACATAAACAACTCCCTGAGTCAACAAGAAAAGGGTTTGGAAATGATTAGCGGCACCAGGAGACTTTAACATGACAAGCCCTGGGGCACCCCACTGGGGAATCTGGGTCACTGACACCTTCCCCGGGAGAAAATGTCCTTTGAAATCAACCATAAACCTGAGCGTTCACTTCTCTGTACACATACACCTCCTGCAGCCCTACCCCGTGGAGAGCCCACTGCCACCCTGCTCCAGAAGCTCCACATCTCCCCGGCACAGTTCAGGAAACACACAACACGACACCCTTCTCTTCTGAACCCCCCGACCCGTCTTTCACCATCTTCACTAAAGTAGACAAGTCTTTGTTCATTATCCTACTGCATTTTCCTCCTCTGCTTCTTTTTTCTCTTCTCTTTCTTTCCCTTCCATTTTCTCTGTGCTGTTCTCAGTCATGTCCCACTCTTCGCAACCCCAAGGACTGCAGCCCACCAGGCTTCTCTGTCCATGGGATTTCCCAGGTAAGAATACTGGAGTGGGTTGCCATTTCCTACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGCAGTCCATGGGGTCGCTAAGAGTCAGACACGACTAAGTGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCATTGTTCTTGCCTGGAGAATCCCAGGGACAGGGGAGCCTGGTGGACTGCCATCTATGGGGTCACACAGAGTCGGACACAACTGAAGCGACTTAGCAGCAGCAGCAGCATTGGCAGGTGTACTCTTTACCATTAGTGCCACCTGGGAAGCCCCCGTTATCCTAAATATCCAAAGAAACATGGTCCCTGGGGTGCTAATCCAGTCCAGAGTAAAGCCTGGAGAAAAGATCTTCTTCAGAGTTCCACCTTCATCCAAATCCAAATAAAAATCTCATTTTTATGAAAGGGACATTGAGGTTTGAGTCAAACCTTGGGTGTTCTTTCTGTAGACTCAGAAAGCATTTAGTTGGAAAATATAATCCATATGCACCGTGGACAAGGTCATGAGAATCCACTGACTTATTTACACCCCTGGGTCAGGAAGATCCCTTGTAGTAGGAAATGGCAACCCACTCCAGTTTTCTTGCTTGGGAAATCCCATGGACAGAGGAGCCTGGTGGGCTGCAGTCTTTGGGGTTATAGTCAGACAGTTCTGAGCATGCAAGCACAATCCAGATGAAGATTTCCCCCTAATCTCTGGTCAGTCGTCTTGTCTTCCCTAAACCTGCTCCTCTGCTCTGTGGGTCCCAGTGGGCACACCGCCCCCTCCCCCGTTGTTAATTGAGCTTCGGTCTCAACTACCATTGCCCTGCATTGCACAAACGAACAGTTTCTCTGTGCCTTTGGGCAACCATGTGGAGTTGCACATCTTGCCTGGGCTCATCTTCTTCAGTGCCTCTGTCTGAGTGGAAGAAAACGTGTGTCACTGAGCACATCTTCTTAGGAGCCCCGAGTCTAACCCCAAGCTCTTCTTCCAG
Seq C2 exon
GTAGAAATATGGCTGAACCACGTGCTGGCTCACATGAAGGCCACGGTGAGGCACGAGATGACAGAAGGTATAACCGCCTACGAAGAAAAGCCCAGGGAACAGTGGCTCTTTGACTACCCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509:ENSBTAT00000006131:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.048
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(12.1=100)
A:
NA
C2:
PF083938=DHC_N2=PD(6.5=64.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAACGCCACCTTTCCAAAC
R:
TGAGCTGGGTAGTCAAAGAGC
Band lengths:
278-2093
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development