HsaINT1011598 @ hg38
Intron Retention
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11699731-11701247:+
Coord C1 exon
chr17:11699731-11699883
Coord A exon
chr17:11699884-11701121
Coord C2 exon
chr17:11701122-11701247
Length
1238 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
AACCTGAGTTGTTCTTTCAGGTA
3' ss Score
7.3
Exon sequences
Seq C1 exon
GTTCAACGTCACCTTTCCAAACTCTTTGACAACATGGCCAAGATGCGATTCCAGCTAGATGCCAGTGGGGAACCAACCAAGACAAGCCTCGGCATGTACAGCAAAGAAGAGGAGTATGTGGCTTTCAGTGAGCCCTGTGACTGCAGCGGGCAG
Seq A exon
GTAACACAGTAGCCCTTTCCCCTCCTTCTGCTTTTCTCTCTCAAATGCCTTCATTCAAATATGATCAGCATCAACTCTAGGAGGGCCTTTCTGACCTTGGTCCAGAGCTGCTGTCCATGCCCTCCAAGAGCCAGCTTCTTTGACTTGAACTGATGTTGGAGCAGCAGCTGGCGCCCTGCTTTCCTCTTTCAGGGAAGGACACATGTCAACATTCATATCTTTTCCTTAACCAAAGACCTGTGCAGAGGGAAATAAAATGCACATAAACAGCTACCCAAGTCAATGAGAAAAGGATTTTAAAATGATTAGCGGCACCAGGAGACGTCAACATGGCAACCCCTGGAGCATCCTCTGGGAGAATCTGGAACACTGACACCCTCCCTGGGAGAAAAATGTCCTTTTGTGGAACCAGCTGCTTTCCTGAGATGTCCCCTCTCTGCACAAATGTGTCTTAGTGTCACTTCCTCCCACAGCCTTCCCCTTGGAGAACAAACTACCACCGTGCTCCAGGAACTGCCTCCTCCAAATCTCCATGTCCAATGCAAGGGACACAAACCACGGGACCATTTACCCCTTAAGCCTCCTTCCCATCCATTAGCACCACCGATAAATATAAGCCTTTCTTTATTTATTTATCGTCTGAAATGATCCAGCAAAGCATTGCCCCTGGGGATTCTCATCTAGTGCCAAATAACAGCTGGGGTAAGGATATTTTACAGGGTTCCACCCTTATCACCTATATCTAAGAAAGCAATTCTAGTGCCAGAAAATAATCGCTTCTCAGTTATATGAGGGTGGCCCTGGGGTTTCATTCACAATATGTTCTTTCTGTAGACCCAGAAAGCATTGAGCTGGGGAATACAATCCTGGTTTGCGCTTCATACTCAGAGTGGACAAGGTCATGAGAAGCCACTGATTTATTTACACCCAGCTCAACCCAGATTTCTATTTCCTTGTATGAGCTCTGGGTGACAGCCCCCACCCCCTTAACCTGCTACTCTGTCCTGCATATTCCAAATGCACACATCAGCCTGCTGTTAATTAAGTCTGGGTCTCACTTATCACCATCCCGGATTACGTAAACAGCACATCTCTCTGCACCTTCTGGCAGCCACTTGGGGCTGTATACAATGTGTGGGCTCCCTTTCCTTCACTCCCTCAGACTGAGTGGAAGAAAATATGTAGGACTAACCAAAACTTCTCAGGCACCCAGTGTCTAACCTGAGTTGTTCTTTCAG
Seq C2 exon
GTAGAAATATGGCTGAACCATGTCCTTGGTCACATGAAGGCCACTGTGAGGCATGAGATGACAGAAGGTGTAACTGCCTATGAAGAAAAGCCGAGGGAGCAGTGGCTTTTTGACCACCCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174:ENST00000262442:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.048
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(12.1=100)
A:
NA
C2:
PF083938=DHC_N2=PD(6.5=64.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACGTCACCTTTCCAAACTCT
R:
CTGGGTGGTCAAAAAGCCACT
Band lengths:
272-1510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains