Special

RnoINT0049248 @ rn6

Intron Retention

Gene
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52595886-52597309:-
Coord C1 exon
chr10:52597157-52597309
Coord A exon
chr10:52596012-52597156
Coord C2 exon
chr10:52595886-52596011
Length
1145 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
ACACAGAGCTCTTCTTCCAGGTT
3' ss Score
3.95
Exon sequences
Seq C1 exon
GTTCAACGTCACCTTTCCAAGCTCTTTGACAACATGGCTAAGATGCAGTTCCAGTTAGATGCCAGTCAGAACCCAACCAAGACAAGCCTGGGCATGTACAGCAAAGAGGAGGAATATGTGGCCTTCAGTGAGCCCTGTGACTGCAGTGGACAG
Seq A exon
GTCAGCTACAGCCTCTTCCTCTCCTCGTACTTTGCCCACCCCTTACTACTCAAACCAAATTCATGAACATCAGTTTCTTCAAGCCAGAGCTTGTGACCTGGAAAAGAAACTTTTCTTGACTAGGGTCCACACTGAAGCTGCCTCTGATGCCTTACTCTCTCCAACATAAACATATGTCAACATTTTTGTTCCTTCACTCAGCAGAGACCAGTGCTCAGAGAAAAAAAATGCATACAGTCACTGCAGTCAGCTATGAGATTTTCTGATAATTGACAGTATAGAATACGTTAACACAGCCACCTCTGAAGTACCCCATGGGGGAATCTGGAGCTCAAATGCCTTCCTCAAATGTCCTTTTCTTAGATGTCTCCTCTCTGCAAATATAACCCAGAATCACTTCATCCCATAGTTCTTTTCCTCAGAGAGCCCACTACACACCCTTTCTCAAAGAAGTCCCACTACACCTCCAGGCCTCTCACATCCAACTGCAGGCACATGAATCATAGGACAAGTCCTTCCTTACACCCCACCCTGTCCTTCAGCACCGCTGAAGTAAAGTTCCATCCTGTTCATTATTTATAGTGATAGAGCCAAGCATTGTCCCTGGGGAAATGGGACTCACTTCCCATGAAGATACGGCCTGAACAAGAAGGTCTTTCAGAAGTTTCTACAGAAAGAAATTCTCCTATCAGAAAATAGTCCAAACTTCTCAGCTAGATGCAGGTGTCTGGCAACCTTGAGTTATAATTTAGAATATGCACTTTTGATACACTGGGACCAGAAGGCATACAACTGAGAAATGCCAGCTCAGCTAACATCTTTATGATGTATAGACAAGTCCATGAGAATCAACTAAATCTGCTTTAATCTGGGTCTGGGGTTCTTTGTATGAGCTCTAATTAGCATTGCACCACCCTGTCACCTGTTGCCATCTTCTTCTGTGTTCTGTGTTAGCACATTAGCCTAGCTCTCACTCATTACATCCAAGATTATAATCACAGAATCCCTTTGCCTTCCGGCATTTGATTTGTATACAATACTGGAACTCTGTTGTCTTCACTCCCTCAGGCTGGCTGAAAGAAAACAGATAGTATCGATCAACCCTTCTCAGGCTTGTGAAGTCTAACACAGAGCTCTTCTTCCAG
Seq C2 exon
GTTGAAATATGGTTAAACCGTGTGCTTCGTCACATGAAAGCCACTGTGAGGCATGAGATGACAGAGGCGGTCACTGCCTATGAGGAAAAGCCCAGGGATCAGTGGCTGTTTGATTACCCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171:ENSRNOT00000005583:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.020 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF083938=DHC_N2=FE(12.1=100)
A:
NA
C2:
PF083938=DHC_N2=PD(6.5=64.3)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAACGTCACCTTTCCAAGC
R:
TGAGCTGGGTAATCAAACAGCC
Band lengths:
278-1423
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]