GgaINT0127354 @ galGal4
Intron Retention
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1065071-1066321:+
Coord C1 exon
chr18:1065071-1065223
Coord A exon
chr18:1065224-1066195
Coord C2 exon
chr18:1066196-1066321
Length
972 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TGATTTAATCTCCTCTCCAGGTT
3' ss Score
9.25
Exon sequences
Seq C1 exon
GTACAACGTCATCTTTCCAAACTCTTTGACAGCCTGGCCAAGATGAGATTCCAGCTGGACTCTGAGCAAAAGCCAACCAAGATTGGCCTGGGAATGTACAGCAAGGAGGAGGAGTACGTCAGCTTCAGCGAGCCATGTGACTGCAGTGGGCAG
Seq A exon
GTGAGAGGGAGAGCCTCATCCATCACAATGGTCTGGTGAGGTCTGCTCTCCCACCCCGTATTTGGGTGTATCTTGCCAGGATGTGGTAGAACTCCACTACGCTCCCTTAATGAGAGAAAGGTTGGAAGAGGTGCTTGTGTAATTTAACAGCTCCATACTCAGTGGCCCTTGTTCCCATTGTGGTTACGTGCTCACAGAATCAACACGTTGGCATTGCAGTCCACAGTGGGAGTGAGGGCTGGTGCCTTTTTTCCAGCTAATTGGGTTTCATTTATTCATATATTTGTTTTCTAAGACACTTTGAATGTTAGTCTTGCATCTTGTTACAAGTATCCTCATAAGGGAGGAGCTGCACATAAGAAATAGACTAAGCTGTTCCATAGTACCTTGGCATGGGCATCTTTTGGAAGCCAAGGGTTTTTTTCTTATTTTCTCATCTTCATTCCTTCATAGGATGAATTACTGAGCTACTGCTCAGTTTTTCTGTCCCCACAGCTGTACCTTTCTGCATCGATTCTTATAAGAAGCTGAAGTATGTATCAGCCACCAAAGTGCATGGTGGTGGAGCGTGCTGCATTTGTGCTGTCCTCTCAGTGAGGACTTTGTGGAGTACTAATTTCAGGACGAATCTTGTTCCCAAGTTTGGCAGCACTTTTTGCCTGCTGCTGGCAGATTGTACCCAAGTCCTGTCTGTGATTCTTCTTGTGGCCTGGAGGAGGAACATACTGCTCCAAATTACTCATCCGTGGAGTTCATTTTGGTTTCTCCCATAGCTTGAGTTCAAGAAATATCTGCCTGTTGATGTCTACCCATGCAAGGTGTCCAGTAGCAGAATCACCTAAATCCACTGAGCCTGAAAGAGGCTGAGGCTTGTTTAGAGAGTTGAGATGCTTGTGCCTTTCTGTATCTTCACTTAAGCCAAAGGTGCTTAAGAAGAGCAGATGTGTTACTGTGATTTAATCTCCTCTCCAG
Seq C2 exon
GTTGAGGTCTGGCTGAATCATGTACTGAACAGCATGAGGGCTACAGTCAGAGATGAGATGACAGAAGCTGTAACAGCGTATGAGGAGAAGCCGAGGGAACAGTGGCTCTTTGATTACCCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111:ENSGALT00000001676:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.048
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(12.1=100)
A:
NA
C2:
PF083938=DHC_N2=PD(6.5=64.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAACGTCATCTTTCCAAACTCT
R:
TGAGCAGGGTAATCAAAGAGCC
Band lengths:
278-1250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]