MmuINT1008885 @ mm10
Intron Retention
Gene
ENSMUSG00000056752 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:66075044-66076464:-
Coord C1 exon
chr11:66076312-66076464
Coord A exon
chr11:66075170-66076311
Coord C2 exon
chr11:66075044-66075169
Length
1142 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ACCCAGAGCTCTTCTTCCAGGTT
3' ss Score
4.4
Exon sequences
Seq C1 exon
GTTCAACGGCACCTCTCCAAGCTCTTTGACAACATGGCTAAGATGCAGTTCCAGTTAGATGCCAGTCAGAACCCAACCAAGACGAGCCTTGGCATGTACAGCAAAGAGGAGGAATATGTGGCCTTCAGTGAGGCCTGTGACTGCAGTGGGCAG
Seq A exon
GTGAGTGGCAGCCCTTTCCCCTCCTCATACCTTGCCCACCCCTTCCTATTCAGACCAAGTTCAGTGAACATCAAGTCAGAGCTTGTGACCTGGGAGAGCAGCTTTCCTTGACTGGGGTTCACACTGGAGCTACCTCTGATGCCTTCCTCTCTCTGAGAAAAACATATGTTAACATTTCTGTTCCTTCACTCAGGAGAGACCAGTGCTCAGTGAAATAAAATGCATACAGTCACTGCAGTCAGCTATGAGGGTATTTTCTGATAATTGACAGTATAGAGCATGTTAATATGGCAACCCTAAAGCACCTTGTGGGGGAATCTGGAACTCAGATGCATTCTTCAAGAAGAAATGTCCTTCTCTGAGATGTGTCTTCCATGCAAATAGAACCCAGAATTACTTCCTCCCATAGTTCTTTTCCTCGGAGAGCCCACTATACACCCTTTCTCTAAGAAAGTCCCACTTCACCTCCAGGCCTCTCACATCTAACTGCAGGCACATGAATCATAGGACAATTTCTTCCTTATACCCCATCCTGTCCCTCAGCAGCACTGAAGTAAACTCCTTCCCCTGCTCATTATTTATAGTGATACTGCCAAGCATTGTCCCTGAGGGAATGGGGCTCACTTCCCATGAAGAGTAAGGCCTGAACAAGAAGATCTTTCTGACGTTTCTACAGAGAGAAATTCTCCCATCAGAAAATAATCCAATGTTCTCGGCTAGATGGAAGTGGCTGGATACCTTGAGTTCTAATTCAGAATAGGCACGCTTGATAGACTAAGAACTGAGACATGCAAACCCAGCTAACCCCTTTATGCTGTATAGACAGGTTCATGAGAATCAACTAAACCTGCTTCAATCCAGGTTTAGTTGGGGTTCTTTGTATAGCTCTAATTAGCATTCCACCACCCCTTCCACCTATTGCCATTTTCTTCTGTGTTCCACATTAGCACATTAGCCTAGCTCCCAGCCATTACATCCACGATTATAATAGAAAAATGTCTGCCCTTGCCTTCTGGCATCTGATTTGTATACAATGCTGGAGCTCCGTTGTCTTCACTCTTTCAGGTTGGCTGAAAGAAAACAGATAGTATCAAGCAACCCTTCTCAGGCTTTTGAAATCTAACCCAGAGCTCTTCTTCCAG
Seq C2 exon
GTTGAAATATGGCTGAACCGTGTTCTTCGTCACATGAAAGCCACTGTGAGGCATGAGATGACAGAGGGGGTCACTGCCTATGAGGAAAAGCCCAGGGATCAGTGGCTGTTTGATTACCCGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752:ENSMUST00000080665:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.048
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(12.1=100)
A:
NA
C2:
PF083938=DHC_N2=PD(6.5=64.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAACGGCACCTCTCCAAG
R:
TGAGCCGGGTAATCAAACAGC
Band lengths:
278-1420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types