HsaINT0052528 @ hg19
Intron Retention
Gene
ENSG00000151914 | DST
Description
dystonin [Source:HGNC Symbol;Acc:1090]
Coordinates
chr6:56479154-56489426:-
Coord C1 exon
chr6:56489328-56489426
Coord A exon
chr6:56479283-56489327
Coord C2 exon
chr6:56479154-56479282
Length
10045 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATC
5' ss Score
7.05
3' ss Seq
TTACCGCTCACAACTGTCAGAAG
3' ss Score
2.56
Exon sequences
Seq C1 exon
TTCATGGACCTAAGGACTCGATATACTGCCCTGGTCACTCTCATGACACAATATATTAAATTTGCTGGTGATTCATTGAAGAGGCTGGAAGAGGAGGAG
Seq A exon
GTAATCATTAACAGTGAGCACCCTGTAAATATAAAGGAGCTAGAGATGAGCAGTAACTACAGTGTAGTTTGGGAAAGCAAAACATGTTTCATGATAAATTTATGTGGCCGGTAGCAGATGTACAAATAAATATTGAATTATAAAATTACAATGAAAATGACTGAAGGCCTAAGATTTTTGTTTGTCTTTAAGATTCATTCAAATAGAAAGTCATTTCACTTCATGACTTTACATTTTCACTTCAGGACTCTAATATGGTGGGGTTAATGTCTTAAATAAATTACGAAATTTTGGCAGTTTGGCAGAATATTTTTCGGCTTTCTCACAGCTGAGAGGTATACTTCTTTGAAGTATAGTTACTGCTGGTATGATGTCTACAGGAATACCACACGAACACATTTGTCTTATGCATTTTAAATTAATTTGTATCTCAAGAAGTTAAAATTATTATACATAATGTAAAGATGCTAACTTAGAAGTAGTAGACGTTTTTACAAAATGATACTTTTTAAGAATTTTGGAGTTTTTTGTTGTTTTTTTTTTGCAAAAAGATATAGCACATGGCATTTAAAAAGGCTATTTAAATGCCACTCTGATTTGGAGAACTTCTGCAGCTTTGATTCTGCATTTAAAAATCATATTTCTGCATTTATAAATCATATATTTAAAAATCATATAGGAAGAGTAAGGACTTATTTATAAAGATCAGTGGTCACCAAAGGCTCTTGTATGTAATCTAAAAGGGAGTATGCTATGCTTTGTTATCTTGATGTACTTTCTATTCCCCAGAACAGACAAAAATAGTAGAATGAATGTTGAAATAAATAAATTGTGGGCCATTAGCTATTTTAAATTGGACTGTTGTTGAAATTCTAAAGGTGATTATGCTTAATGTAACTCCATATGAGAGCTGAAACAGCAGTAAACATCTATTGGATGTTACTTTCTCAGTTTCCTAAAAATGTGACCACTTTTATAAACTGTTTTAGTCTGTTCAGAGTTAACAGTTTTCTGCAGCTAAATCACTAACATAGCTAATTGCAAGACTTTATAACCCTCTTCCTTTGTGCTTAGGAGAACCAGGATATTTGTGACCATCTTAAATGCATGCATCTCTCATCTATGAAAGAACATCCATAATTTTCTTATATTTTTAGTTTTTGAGAGATCTTATTCCATTTTAAATGGTATACAGATCTTTTAAATTGAATATGCAGTAGTTAAATATAAAATAAAATAACTTAAGTTCTTTTCTCATAGTATGTATCTGATTATACATATATGGGCCACTTACTCGATTTATCTGATGAGGCAGAATGCTAACAATTGATAGAAACAAAAAATATTTTAGAAGGCCTTAATTGAATGCAAGTTATTATTGTCCTTAAAAATGTCAAAGATTTGTAGTTAATTGAAACCAGCAAATACAGTTATGGAAGAACAAGCGAAGGCTATAATTTAAAATAGGTTAAAAAAAACTACCACTTAACATTACGTTAATGGAATGTCGTGTAAAAGATACATAGCTTAATTTTTAGACTCAAAAGATTGGTGTTTCTGCAACTGAGGTTTGAAGACCCACATGAAAAACCTTGGTCTAAAGCAGAATTTTCCATAATAAACATAAAATCAAAGATGGATGCAAGTTAATTTCAGAAGTAATACTGATTTAGTTAAAAGAAATGTTACTAAAATATCTGTAATAGATATTAGATATTAGAGAGAGATGCTTTAGTCTGTGCTGAGAACAAAATATGCTAAGTATTAATCACCGTGATTAAAGGGCAAGATTGAGGAAGATTTAGAGAAAAGTTAAGGAAGTTATTTTTATGCAAATAAGTTTGAGATCCACAAGAAAGCAAGTCAGCAATTGGACTAAATTATTTCTAGTAATTTTTCTCACATTTGCTAAAAAAGTCAAGAGACAACATGATTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGATCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGTAATTCACTGCCTCAGCCTTCCGAGTAGCTGGGATTACAGGCGCCTGCCGCCTGCCACCACGCCGGGCTAATTTTTCTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAAGCTGGTCTTGAACTCCTGACCTCATGATCCACCCGCCTTGGGTTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGTGCCCAGCCGAGATTCTTAACAAATCACTGCATTGCCTAAGGCATTGAGGGTTCAACAACAGATATTTTTTTCTGAGGGAATTTTTAGTTTTTCTAAATCTGAGCATGAGAAATAGCTCAGAATTTCTTAGCAATAGCTAAGTTTTAAAGGAGGTTTGATAAGCAACTGAGACTGTCTTAGAAATAACCTCCTCAAGAAATACTGAAAACTTAGTATTTAAATAGATAAAATGCTCATGTGTCACAGGATTGACCCTGATACTAAAATAAAGAAAATAGAGTGCTGAAGATAACAGATTATGAGATTTGTTTCTGTATGAATTATTATTAGAAACCTTATTTAGGTTAGCAAAGAAAACAACTGAAATTCTCATCAAAATTATTGGAGATCAAGAAATTAGAGGAAGCAAAATAAGATGTATGGTCTGTAATAGAAATTAAATTCTTGAAATTCACCAAAGCTTCTCAATGAAAACAAATCTGTCTAAAATAATTTCTGTATTCCTGTTTAAATTATTTTATGGTGATCTTGAGTTGATGATACAAAACTAACACACTAGAATATTAATAAAGAGAAATTAAATTGTAATTATAAACTAATCCTGATCATGTAGTTCTATAATCAATGTAAAGCATACTCCTCCCAGCTGACATTGATTCTGTCCCTAGTAGAGTAAAAATTTTTTCTTATAATTTTTTCTATACATTGGAGCTGAATCCCTAAGTATATATTTAAAAGCTATTATACTTAACAAATATCTTTATATTTATGGAGTATTTAAAGGTGCTTGTCAAAGTGATTCATATGAGGCATGTTATTAACAACAGCAACAAAATCTGTGAGTATATGAAGCGCATCTTTTCCAGAGCCATCAGGACTGTAGCTGCCTTTGCATTAGCAATTCTGATTATTATAATTGTCATAATATGGCAAGTATAAACAAATAAGGGATCTGACTTTAGAAATTTCAAGTTTTTGTATAATTTTCCTTCTTCCCCATGTTATTTCCTAATTTGGCTCTCTGTTCTAAAGTTCTGTGCTTTGTTTTTTTAACCATAAGACATGGGAATATAAGTATCATTTTTAATTTCTATTAGGTTAGAAAACTAAATTCTTTAGCATCATTTGGTTCCTATGTGTTGGGTGTTCTTCCTACCTCTTAGGATTATGTTGCATGCAAGAGAAGAAAGGGCACCGTCGTGAGAGTTTTATTTCCCACTTTGTCACTCACCCAATGTGAGTTTGCAAAAATATCTGTCCTCCTCGTTTCTCCCTTTCCTCATCTGTTGTAAATTCCCTTCTTGCTATAAAATTCTAAGCTAGCTAATTTTTAAAATAAAATTATTCCTGAGGGGCAAAAAGATATTCTTCAGAAAACCTGTCGTGAAGGGTTTTTTGTCCTCTTCTGCTGACTTTCTGAGGCTTCCTCTCTGAAGAAGGTGATGCTGCTGGTGGTGGTGATAGCGCTTGTTCTGCATTTGAGTTCACTTGGTTTTGTAAGTACTTTTATGAACATTGATTCATACGTTGTAAGATATTTTGAACAGAACAGGCTTGACACTTTCAAAATGTCTTTTGTAGATTAAAAGGTGTAAGGAGACTTCTGAACATGGGGCATATTCAGATCTGCTTCAGCGTCAGAAGGCAACAGTGCTTGAGAATAGCAAACTTACAGGAAAGATAAGTGAGTTGGAAAGAATGGTAGCTGAACTAAAGAAACAAAAGTCCCGAGTAGAGGAAGAACTTCCGAAGGTCAGGGAGGCTGCAGAAAATGAATTGAGAAAGCAGCAGAGAAATGTAGAAGATATCTCTCTGCAGAAGATAAGGGCTGAAAGTGAAGCCAAGCAGTACCGCAGGGAACTTGAAACCATTGTGAGAGAGAAGGAAGCCGCTGAAAGAGAACTGGAGCGGGTGAGGCAGCTCACCATAGAGGCCGAGGCTAAAAGAGCTGCCGTGGAAGAGAACCTCCTGAATTTTCGCAATCAGTTGGAGGAAAACACCTTTACCAGACGAACACTGGAAGATCATCTTAAAAGAAAAGATTTAAGTCTCAATGATTTGGAGCAACAAAAAAATAAATTAATGGAAGAATTAAGAAGAAAGAGAGACAATGAGGAAGAACTCTTGAAGCTGATAAAGCAGATGGAAAAAGACCTTGCATTTCAGAAACAGGTAGCAGAGAAACAGTTGAAAGAAAAGCAGAAAATTGAATTGGAAGCAAGAAGAAAAATAACTGAAATTCAGTATACATGTAGAGAAAATGCATTGCCAGTGTGTCCGATCACACAGGCTACATCATGCAGGGCAGTAACGGGTCTCCAGCAAGAACATGACAAGCAGAAAGCAGAAGAACTCAAACAGCAGGTAGATGAACTAACAGCTGCCAATAGAAAGGCTGAACAAGACATGAGAGAGCTGACATATGAACTTAATGCCCTCCAGCTTGAAAAAACGTCATCTGAGGAAAAGGCTCGTTTGCTAAAAGATAAACTAGATGAAACAAATAATACACTCAGATGCCTTAAGTTGGAGCTGGAAAGGAAGGATCAGGCGGAGAAAGGGTATTCTCAACAACTCAGAGAGCTTGGTAGGCAATTGAATCAAACCACAGGTAAAGCTGAAGAAGCCATGCAAGAAGCTAGTGATCTCAAGAAAATAAAGCGCAATTATCAGTTAGAATTAGAATCTCTTAATCATGAAAAAGGGAAACTACAAAGAGAAGTAGACAGAATCACAAGGGCACATGCTGTAGCTGAGAAGAATATTCAGCATTTAAATTCACAAATTCATTCTTTTCGAGATGAGAAAGAATTAGAAAGACTACAAATCTGCCAGAGAAAATCAGATCATCTAAAAGAACAATTTGAGAAAAGCCATGAGCAGTTGCTTCAAAATATCAAAGCTGAAAAAGAAAATAATGATAAAATCCAAAGGCTCAATGAAGAATTGGAGAAAAGTAATGAGTGTGCAGAGATGCTAAAACAAAAAGTAGAGGAGCTTACTAGGCAGAATAATGAAACCAAATTAATGATGCAGAGAATTCAGGCAGAATCAGAGAATATAGTTTTAGAGAAACAAACTATCCAGCAAAGATGTGAAGCACTGAAAATTCAGGCAGATGGTTTTAAAGATCAGCTACGCAGCACAAATGAACACTTGCATAAACAGACAAAAACAGAGCAGGATTTTCAAAGAAAAATTAAATGCCTAGAAGAAGACCTGGCGAAAAGTCAAAATTTGGTAAGTGAATTTAAGCAAAAGTGTGACCAACAGAACATTATCATCCAGAATACCAAGAAAGAAGTTAGAAATCTGAATGCGGAACTGAATGCTTCCAAAGAAGAGAAGCGACGCGGGGAGCAGAAAGTTCAGCTACAACAAGCTCAGGTGCAAGAGTTAAATAACAGGTTGAAAAAAGTACAAGACGAATTACACTTAAAGACCATAGAGGAGCAGATGACCCACAGAAAGATGGTTCTGTTTCAGGAAGAATCTGGTAAATTCAAACAATCAGCAGAGGAGTTTCGGAAGAAGATGGAAAAATTAATGGAGTCCAAAGTCATCACTGAAAATGATATTTCAGGCATTAGGCTTGACTTTGTGTCTCTTCAACAAGAAAACTCTAGAGCCCAAGAAAATGCTAAGCTTTGTGAAACAAACATTAAAGAACTTGAAAGACAGCTTCAACAGTATCGTGAACAAATGCAGCAAGGGCAGCACATGGAAGCAAATCATTACCAAAAATGTCAGAAACTTGAGGATGAGCTGATAGCCCAGAAGCGTGAGGTTGAAAACCTGAAGCAAAAAATGGACCAACAGATCAAAGAGCATGAACATCAATTAGTTTTGCTCCAGTGTGAAATTCAAAAAAAGAGCACAGCCAAAGACTGTACCTTCAAACCAGATTTTGAGATGACAGTGAAGGAGTGCCAGCACTCTGGAGAGCTGTCCTCTAGAAACACTGGACACCTTCACCCAACACCCAGATCCCCTCTGTTGAGATGGACTCAAGAACCACAGCCATTGGAAGAGAAGTGGCAGCATCGGGTTGTTGAACAGATACCCAAAGAAGTCCAATTCCAGCCACCAGGGGCTCCACTCGAGAAAGAGAAAAGCCAGCAGTGTTACTCTGAGTACTTTTCTCAGACAAGCACCGAGTTACAGATAACTTTTGATGAGACAAACCCCATTACAAGACTGTCTGAAATTGAGAAGATAAGAGACCAAGCCCTGAACAATTCTAGACCACCTGTTAGGTATCAAGATAACGCATGTGAAATGGAACTGGTGAAGGTTTTGACACCCTTAGAGGTATACTCTGTGTTCTGAGACCTTATCAGCTACCTAATGTCAAGTTTCCTCATTTGTTTCCTTTCTCTCCTAGACTAAATTTTTAAAACAATTTTGAATGTGATTGGCTCATTGTAGTTCTGACAGGAAAATAATGCTATACTCTTTCTGGTAACTTACTTGAATCTTTATCATAAATTAACTTTAATTTTTGAATGTTTGAGATTAAACATACAGATGTAATAGATATACTGTTATATCTGTGGAGATACATTCTGAAAAATGTGAGTATCAAAAAAGCTAGAAGAACCAAGCAGTTAGCTTTAACTTCTAACATATTCTGTGGCTAGACTTTGTCTTAGTCTTTTTTAAAGATATAATTTTAATACCTTTAATTGTCATCTAAGATAAAATTCAGACTCTGAAAATAATATAATACTTATTCCTGAACCCTCCTTGGTTTGAAATTTTTCTTCTTTTCACTAATCTTGTCTTTGTAATTCAAAGAATTATGTTTGGATTGAGAATGGATAAAGTGACATAATGTTCTTGAGGTGACTTTTAACATTTTATAAATTCCTGTTACAGATAGCTAAGAACAAGCAGTATGATATGCATACAGAAGTCACAACATTAAAACAAGAAAAGAACCCAGTTCCCAGTGCTGAAGAATGGATGCTTGAAGGGTGCAGAGCATCTGGTGGACTCAAGAAAGGGGATTTCCTTAAGAAGGGCTTAGAACCAGAGACCTTCCAGAACTTTGATGGTGATCATGCATGTTCAGTCAGGGATGATGAATTTAAATTCCAAGGGCTTAGGCACACTGTGACTGCCAGGCAGTTGGTGGAAGCTAAGCTTCTGGACATGAGAACAATTGAGCAGCTGCGACTCGGTCTTAAGACTGTTGAAGAAGTTCAGAAAACTCTTAACAAGTTTCTGACGAAAGCCACCTCAATTGCAGGGCTTTACCTAGAATCTACAAAAGAAAAGATTTCATTTGCCTCAGCGGCCGAGAGAATCATAATAGACAAAATGGTGGCTTTGGCATTTTTAGAAGCTCAGGCTGCAACAGGTTTTATAATTGATCCCATTTCAGGTCAGACATATTCTGTTGAAGATGCAGTTCTTAAAGGAGTTGTTGACCCCGAATTCAGAATTAGGCTTCTTGAGGCAGAGAAGGCAGCTGTGGGATATTCTTATTCTTCTAAGACATTGTCAGTGTTTCAAGCTATGGAAAATAGAATGCTTGACAGACAAAAAGGTAAACATATCTTGGAAGCCCAGATTGCCAGTGGGGGTGTCATTGACCCTGTGAGAGGCATTCGTGTTCCTCCAGAAATTGCTCTGCAGCAGGGGTTGTTGAATAATGCCATCTTACAGTTTTTACATGAGCCATCCAGCAACACAAGAGTTTTCCCTAATCCCAATAACAAGCAAGCTCTGTATTACTCAGAATTACTGCGAATGTGTGTATTTGATGTAGAGTCCCAATGCTTTCTGTTTCCATTTGGGGAGAGGAACATTTCCAATCTCAATGTCAAGAAAACACATAGAATTTCTGTAGTAGATACTAAAACAGGATCAGAATTGACCGTGTATGAGGCTTTCCAGAGAAACCTGATTGAGAAAAGTATATATCTTGAACTTTCAGGGCAGCAATATCAGTGGAAGGAAGCTATGTTTTTTGAATCCTATGGGCATTCTTCTCATATGCTGACTGATACTAAAACAGGATTACACTTCAATATTAATGAGGCTATAGAGCAGGGAACAATTGACAAAGCCTTGGTCAAAAAGTATCAGGAAGGCCTCATCACACTTACAGAACTTGCTGATTCTTTGCTGAGCCGGTTAGTCCCCAAGAAAGATTTGCACAGTCCTGTTGCAGGGTATTGGCTGACTGCTAGTGGGGAAAGGATCTCTGTACTAAAAGCCTCCCGTAGAAATTTGGTTGATCGGATTACTGCCCTCCGATGCCTTGAAGCCCAAGTCAGTACAGGGGGCATAATTGATCCTCTTACTGGCAAAAAGTACCGGGTGGCCGAAGCTTTGCATAGAGGCCTGGTTGATGAGGGGTTTGCCCAGCAGCTGCGACAGTGTGAATTAGTAATCACAGGGATTGGCCATCCCATCACTAACAAAATGATGTCAGTGGTGGAAGCTGTGAATGCAAATATTATAAATAAGGAAATGGGAATCCGATGTTTGGAATTTCAGTACTTGACAGGAGGGTTGATAGAGCCACAGGTTCACTCTCGGTTATCAATAGAAGAGGCTCTCCAAGTAGGTATTATAGATGTCCTCATTGCCACAAAACTCAAAGATCAAAAGTCATATGTCAGAAATATAATATGCCCTCAGACAAAAAGAAAGTTGACATATAAAGAAGCCTTAGAAAAAGCTGATTTTGATTTCCACACAGGACTTAAACTGTTAGAAGTATCTGAGCCCCTGATGACAGGAATTTCTAGCCTCTACTATTCTTCCTAATGGGACATGTTTAAATAACTGTGCAAGGGGTGATGCAGGCTGGTTCATGCCACTTTTTCAGAGTATGATGATATCGGCTACATATGCAGTCTGTGAATTATGTAACATACTCTATTTCTTGAGGGCTGCAAATTGCTAAGTGCTCAAAATAGAGTAAGTTTTAAATTGAAAATTACATAAGATTTAATGCCCTTCAAATGGTTTCATTTAGCCTTGAGAATGGTTTTTTGAAACTTGGCCACACTAAAATGTTTTTTTTTTTACGTAGAATGTGGGATAAACTTGATGAACTCCAAGTTCACAGTGTCATTTCTTCAGAACTCCCCTTCATTGAATAGTGATCATTTATTAAATGATAAATTGCACTCGCTGAAAGAGCACGTCATGAAGCACCATGGAATCAAAGAGAAAGATATAAATTCGTTCCCACAGCCTTCAAGCTGCAGTGTTTTAGATTGCTTCAAAAAATGAAAAAGTTTTGCCTTTTTCTGTATATAGTGACCTTCTTTGCATATTAAAATGTTTACCACAATGTCCCATTTCTAGTTAAGTCTTCGCACTTGAAAGCTAACATTATGAATATTATGTGTTGGAGGAGGGGAAGGATTTTCTTCATTCTGTGTATTTTCCTTACATGTACAGTAGACGTTCTCTATTCTATCAGCCTTCTATGGTACCTTTTTGTCAGGACAATTAGGATTGTAATGCTAATGCAAAGGCAGCAATTCAAAGATCTTCTAGTGCCTCATGAATAAAGTTGAGATTTAAAATTTGTAACATTGATGGAACAGCTGGGAGGTTAGACCAATCATTAAGGAATGTATGCCATAGCTTTCTTTGCTACCATAAACATTTTGGAGGTGCATCTGCTATGTGACATGGTAAATATGGTTAAGTGAATGAATAAAATGTTTTAGTAACCTGTGTGTGATGAAAAAAAATTTTTACATTCTTGTTTGCTATGGAGAGGTCAGTTTAATAGCTAAGTCATTTAATGCAGTGTATATTTTTCTTACCGCTCACAACTGTCAG
Seq C2 exon
AAGTCACTGGAAGAAGAAAAGAAAGAACATGTTGAAAAAGCCAAAGAATTGCAAAAATGGGTATCAAATATCAGCAAGACATTGAAAGATGCAGAGAAGGCTGGAAAACCTCCCTTCTCTAAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151914-DST:NM_015548:22
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=NA C2=0.537
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(25.0=100)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)