MmuINT0053576 @ mm10
Intron Retention
Gene
ENSMUSG00000026131 | Dst
Description
dystonin [Source:MGI Symbol;Acc:MGI:104627]
Coordinates
chr1:34174697-34184144:+
Coord C1 exon
chr1:34174697-34174795
Coord A exon
chr1:34174796-34184015
Coord C2 exon
chr1:34184016-34184144
Length
9220 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACC
5' ss Score
8.55
3' ss Seq
TAAACACTTGTACCTGTCAGAAG
3' ss Score
1.64
Exon sequences
Seq C1 exon
TTCATGGACCTACGGACACGGTACACTGCCCTGGTCACTCTTATGACGCAGTATATTAAATTTGCTGGTGATTCGTTGAAAAGGCTGGAAGAGGAGGAG
Seq A exon
GTAACCGTTAACATGTTACATCCGTGTGAACAGGGACTAGGTTTGAGCCGAAACTGTAATGCTTTGGGAAGGAAAAATAAGCTTCGTGATGAATTTACATGGCTGATTGCTAACATGCAAGTCGTTAATTAGTAGCTTAACCTGGAAGAGACGGAAAGCCTTGGACGTTTGTTTGGGTTTTCGAGTCTCCAAAACAGAAAAACATTTTTGTAAAAGATTTATTTATTTATTTATTTATTTATTTAATGTAAGTACACTGTAGCTGTCTTCAGAAGACCAGAAGAGGGCGACGGATCTCATTATGGATGGCTATGAGCCACCACGTGGTTGCTGGAATTTGACCTCAGAACCTTCAGAAGAGCAGTCATTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCCAGAAAAGCATTTTTAAAGCTTTACTTCAGGAGGACTGGAGTATCGGCTGAGTGTACTTTAGTCATGGGTTTGATCCCCAAGCCTCAAAAGCAGCTACTTCAGCACCAGTGTGGTAGAATCAGTGTCATCCACAGTGCTGGGTCAGCGGGAACATTTGGGCAGAAGCGGCTTGAGCTTCTTCACATCTGAGTTTCTATCAAGTGCAGATGCTGCTCATAGGAAGTCTGTAGAGAACTTCCACGCACACACACCTCCGTTACGCATCTTAAATTGACATACGTTGTTTAAAAGTTAAATTAAAATCAGCTGTATTAAAAAGACACACTTAATAGTATATATTTGTGCAAAAGAATGGGCTTAAGAAGTGTGGAACTTTAAGCTTTGCATTTTTGCCAAAAAATTATATGTGTTAAGAAGAGTAAACCTCTTTCTGATACAAAGGGTATTTGCAGCTTTGATCCTGAACTTAGAATTGTGCTGAGAAACAGGAAGAGTAAGAAATGACTTGTAGCCGGGCGGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAACTGATTCTAGGACAGCCGGGGCTACGAGAAGAAACGCTGTCTCGAAAGACAAACAAGCAAAAGATATGTAACTAACTGGAGTTTTAGACCCCTAGTGCTTCTGAAACAGTCTTGAAGTTCTCCAGGATGAACTGCCCTCAGAGAACAGTTTTTCATAATCAACACACAAGCAGAGATACCTGAAGAGTTCAGAAGTAACAGCGTGTGTTAGAGAAATATAGAGCATTAACTTAGATGTGTATTTGATATGGTGGAGAAATTCTGTAGCTGATACGAACACCCAACTCTAGAAGTTATTGATCCCTCTGCAGAGAGCTGAGAGACCTTTCAGGGAGCTGATTTTCATGCATAAGTTTGATGGAAAGATGTAAAACCAGTAACTGACCTAATTATTGAGGGTAATTTTAAGCATAAGTGAAAAAAATCTAGTTAGTTAGATAACATAGACTTATTAATAAACCACCAAAATTACTCTAATTAAGATACTGAAGACTCAGCAATAGATTTTATTTTATTTTTGCTGAGGTAAACAAATTCTGACTAAGAGAAAACAGCTCAGAATAACATGGCTATAGCTAAGCTATGCTTCTGAGAAAGATTTGATGAGGGACTGGTTCTCAGAAAGAATTTTTTTTAAATTAAATTTTGTGGTTTTTGCTTTTGAGATAGTGTCTCTCTGGTTAACCCAGAATGATGGGCCAGAACTCCAAGTCCTCCTGTTTCAACCTGAGTACTGGGATCACAGGTGTGTGGTCTGTGCCCTGAGAAGACTTCATGTTTTCAATATGCAGAATGCTGTAGTGTCCTGAGGGTTGACTTTGATACAGAATTGAAATATACCATTGAGCGTAGCAATTGCTACGAGACTTGTTTTTCTGTGGACTCGTATTAACAACCATGGGGAGATTAATGAAGGAAGTTGAGCTTTTAAGCCCCAAATTATCAGAGACCAAGAAAGTGGAAGAAGAAAAAGATTTGTTATCAGTTAAATCCTTGAAAGTCACATATTCCAGTGAAAACAAAGCATATCTAGAAAATGATTTTGTCTTTCTAGTTCAGCTGTTATCTCTCTTTTCAAATTGATACTGACTTGAAATATTAAGTAAGAAAACTAGAATATGTTTATAAACTAGCCCAAACATTCAGTATTTCAATTAATATTTACTTCCCCGGTCCTCCCAGCTGCTGAAAGGTTTCCTGATACGTATTTGGTAAGATGGATATGAATCCCTATGTATATTTTTAAATCCTTCCTATTTCACAAGTTCCTTTGTATTTGTGGGGTATCTTAAGGACTTGACAAGACGGGTTCCAGATGAGGCATACCAACAACGATGACCTGGGGGCACCTGAAGCCATCAGGGACAGGCGCTGCCTTTGCATTAGCAATGACCTTCATTGTAACTGTCACATTTGCATGCATAAACATTGACTTAGAAATGTCAATGTTTTGCGTACTTCTCCTTTCCCCTGTTTTAAAGTACTATTTCTGACTTTGGCTCTCTGTTCTGTTTCTTTAATCATAAACATGGGACTGCGCATATCATGTTTAATTTCCACTGAACTCTCCGCTCTTGAAAACTGAATCTTGCGTTCTTTGGTTCTTGTGTGGTGGTGGTGTTCTAAGCTGACAGAATTATGTTGTATGAGACTAGAGTGGCTATCATTATAAGAAAAGCTTATGTTTTCTATTTATAAAAGTTTGGGGTCCCACTCTTGTTCTGTAGAGACATTTCTTGCTTCAGAACCTCAAGCCTGCTAATTTTCAATATGAAATTACTCCTGAGGGGCAGAAGACATTCGCTGGCAACCGAACAGGCTTGCAGGATTTCTGTCTCCTTCCTCCTGGCTTTCTGAGGCTTCTGTTCTGAAGGTGCTGGTGCTGGTGGCGACTGCTTATTCCGCATCTAAGTTCCCTTGGTCTCGTAAGTACTGCTCCAGAGGCTGCAGAATCTATGTCAATGGGACGCCTTTGACCCTTTAAATGTTTCTCGCAGATGAAAAGGTCTAAAGAGAATTCTGAGCACGGGGCGTATTCAGATCTACTGCAGCGTCAGAGAGCAACCATGGTTGAGAATAGCAAACTTACCGGGAAGATCAGTGAACTGGAAACAATGGTGGCTGAGCTAAAGAAACAGAAATCCCGGGTCGAGGAGGAGCTTCCGAAAGTTAAGGAGGCCGCCGAAAATGAACTGAGGAAGCAACAGAGGAACGTGGAAGACATCGCCCTGCAGAAGCTGAGGGCCGAGAGCGAGGCCAAGCAGTACCGCCGTGAGCTGGAGACGATCGTGAGGGAGAAGGAAGCTGCCGAGCGGGAGCTGGAGCGGGTGAGGCAGCTCACGGCGGAGGCGGAAGCTCGGCGAGCCGCGGTGGAGGAGAACCTCCGCAACTTCCGGAGCCAGCTGCAGGAAAACACCTTCACCAGGCAGACGCTGGAAGATCATCTGCGGAGGAAAGACTCGAGCCTCAGTGATCTGGAACAGCAGAAACGGGCCCTGGTGGAAGAACTGCAACGAAAGCGGGACCACGAGGAGGAGCTCCTGCGACTGGTGAAGCAGATGGAGCGGGACCTGGCCTTCCAGAAGCAGGTGGCCGAGAAGCAGCTGAAGGAAAAGCAGAAGGTCGAGTTGGAAGCCAGAAGGAAAATCACCGAAATTCAGTTTTCATGTAGAGAGAGCGCTGCGGTGGCACAGGCACGGCCCCAGAGGGAGCAGGGCAGACAGAAAGAGGAGGAGCTGAAGCAGCAGGTGGATGAGCTGACCTTGGCCAATAGGAAGGCAGAGAAAGAGATGAGGGAGCTGAAGTATGAACTCAGCGCGGTCCAGCTCGAAAAGGCCTCGTCTGAGGAAAAGGCCCGGCTGCTGAAGGATAAATTGGACGAGACGAATAACACACTCAAGTGCCTCAAGGAAGATCTGGAAAGGAAGGATCAGGCCCAGGAACGCTATTCCCAGCAGCTCAGAGACCTTGGCAGGCAGCTGAACCAAACAACAGACAAAGCTGAAGAGGTCAGGCAGGAAGCAAACGATCTCAAGAAAATAAAGCACACCTATCAGTTGGAATTAGAGTCTCTCCATCAAGAGAAAGGAAAACTCCAGAGGGAAGTTGACAGAGTCACCAGGGCGCACGCACTAGCCGAGAGGAACATTCAGTGTTTAAACTCCCAAGTTCACGCTTCGAGGGATGAGAAGGACCTCTCAGAAGAGAGGAGACGGCTCTGCCAGAGAAAATCAGACCATTTAAAAGAAGAGTTTGAGAGGAGCCATGCACAGTTGCTTCAGAATATTCAAGCCGAGAAAGAAAATAATGATAAAATCCAAAAGCTGAATAAAGAGCTGGAGAAAAGCAATGAGTGCGCAGAAACGCTCAAGCAGAAGGTGGATGAACTCACTAGGCAGAATAATGAAACCAAATTGATGATGCAGAGGATTCAGGCAGAGTCCAAGAACATAGTCCGCGAGAAGCAAGCCATCCAGCAGAGATGCGAAGTGCTGCGGATCCAGGCAGACGGTTTTAAGGATCAGTTACGGAACACCAACGAACACTTGCATAAGCAGACAAAAACAGAGCAGGATTTCCACAGAAAAATTAAAAGCCTCGAAGATGATCTAGCCCAAAGTCAAAACCTAGTAAGCGAGTTCAAGCAAAAGTGTGACCAGCAGAGCATGATCATCCAGAAAACGGAGAAGGAGGTGAGGAGCCTGAGCGCAGAACTGAGCGCGTCCAAAGAGGAGAAGCGGCGGGAAGAGCAGAAGGCTCAGCTGCAGCGAGCTCAGGTGCAGGAGCTGAATGACAGGCTGAAGAGGGTGCAAGACGAGCTGCACCTGAAGACCATCGAAGAGCAGATGACCCACAGGAAGATGATCCTGCTCCAGGAAGAGTCGGATAAGTTCAAACGCTCGGCAGATGAGTTTCGGAAGAAGATGGAGAAGCTAATGGAGTCCAAGGTCGTCACTGAAACCGATCTCTCAGGCATCAAGCACGACTTTGTGTCTCTCCAGAGAGAAAACTTCCGGGCGCAAGAGAACGCGAAGCTGTGGGAGACCAACATTCGAGAGCTTGAGCGGCAGCTTCAGTGCTACCGTGAGAAGATGCAGCAAGGCCCGCCCGTGGAAGCAAACCACTATCAGAAGTGCCGGAGACTCGAGGAGGAGCTGTTGGCCCAGAGACGGGAAGTTGAAAACCTCAAACAAAAAATGGACCAGCAGATAAAGGAACATGAGCACCAGTTGCTTCGGCTCCAGTGTGAAATCCAAAAGAAGAGCACAACCCAAGACCACACCTTCGCGTCGGCTTTTGATACGGCAGGGAGAGAGTGCCACCACCCTGCAGAGATCTCCCCTGGGAACTCTGGGCACCTTAACCTAAAGACCAGACTCCCACTGTCCAGGTGGACTCAGGAGCCACACCAGACAGAAGGAAAATGGCCGCACAGGGCTGCTGAACAACTTCCGAAGGAGGTTCAGTTCCGACAGCCAGGGGCTCCGCTGGACAGGGAGAGCAGCCAGCCATGCTACTCGGAGTATTTTTCTCAGACAAGCACTGAACTGCAGATAACTTTTGATGATAAAAACCCAATCACGCGACTGTCTGAACTAGAGACGATGAGGGAGCAAGCCCTGCATCCCTCCAGACCGCCGGTGACGTATCAGGATGACAAACTTGAAAGGGAGTTGGTGAAGCTTTTGACACCCTTAGAGGTACACATTGGCCTGAGGCCTTATTAGCTGTGTCATGTCAGGCTGCTGCTTTTATTTCTTTTTCTTTTTTTTTTTTTTTCTCCCAAGACTAGATTTTTTAAGTTTTGAATGCTTAGCTGTGTGTGAGGTGGGGGAAAAAAAAAGAACACTGTAATTTTCCAGCAGTTTGGCTGCATTTACTACAAATTTCCACTGACTTATGAATGCTTGAGATGAGATATAAATATGGGTGGGTAAACTTATTTCTATAGGAGTAAATATTTTAATATGACTATTTTTTTTTAAGATCTAGAAAATCGTTGTTGGTGCAGTTCAGTGGTAGAAGGCTTCCCTGGCATATAGATGGCCCAGGGTTAGAGACCCAGAACTGCAAGAGAGAGCGGGAAAAGATAGAAGAATCAAATACCACCTTCAATTTCTAGCATACTCTGTGGCCAGGTTTCATTCTGACCTCTTCCCACTCATCGCTTTAATGTATTCAGTTGCTAACACGAGTCTCTCAGAATATTATCCCTACCCTGGGCTTGCAATTCTCCACTCAGTTATAGTTGAAGGGATTGTGATTGGGTGGAGACTACTGGATAAAATGTCATGCTCTAGGGGCAACGTTTAACGTCTTAAACATTCCTATTACAGATAGCTAAGAACAAACAGTGTGGCATGCATACAGAAGTCACGACCTTAAAACAAGAGAAGAGGCTGGGTTCCAGTGCTGGTGGATGGATGCTGGAAGGGTGCAGAACATCTGGTGGACTCAAGGGAGATTTCCTTAAGAAAAGCGTAGAGCCAGAGGCTTCCCCGAGCCTTGACCTTAACCAGGCGTGCTCTGTTAGGGATGAGGAGTTTCAGTTTCAAGGGCTCAGGCACACCGTGACTGGCAGGCAGCTGGTCGAAGCCAAGCTCCTGGACATGAGGACAGTTGAGCAGCTGCGGCTTGGTCTGAAGACTGTCGAAGAAGTTCAGAGAAGTCTTAGCAAGTTTCTGACCAAAGCTACCTCCATTGCAGGACTTTATCTAGAATCTTCCAAAGAAAAAATGTCGTTCACTTCGGCGGCCCAGAAAATCATAATAGACAAAATGATAGCTCTAGCCTTTTTAGAAGCTCAGGCTGCAACAGGTTTTATAATTGATCCGGTTTCTGGTCAGACTTACTGTGTTGAAGATGCAGTTCTTCATGGCATCGTTGATCCTGAGTTCAGGAGCAGGCTCCTGGAGGCAGAGAAGGCAGTTTTGGGATATTCACATGCTTCTAAGACGCTGTCAGTGTTCCAGGCAATGGAAAATAGAATGCTTGATAGGAAGAAAGGTAAACATATCTTGGAGGCACAAATTGCCAGTGGGGGCGTCATTGACCCTGTGAGAGGCGTCCGTGTCCCTCCAGAAATGGCTGTGCAGCAGGGCTTGCTGAACAACGCCGTCCTACAGTTCCTGCATGAACCGTCCAGCAACACGAGAGTCTTTCCTAATCCCAACAACAAGCAGGCTCTGTATTATTCGGAGTTACTGCAGATCTGTGTGTTTGATGTAGATTGCCAGTGTTTTCTCTTGCCGTTTGGGGAGAGGGAAATATCCAATCTCAACATAGAGAAAACTCATAAAATTGCCGTGGTAGATACCAAAACTGGGGCGGAACTGACGGCATTCGAGGCTTTCCAGAGAAACCTGATTGACAAGGGTATTTATCTCGAACTCTCAGGGCAGCAGTATCAGTGGAAGGAAGCTACATTTTTTGACTCCTACGGGCATCCTTCTCACATGCTGACTGATACTAAAACTGGTCTGCAGTTCAATATTAGTGAAGCTGTCGAGCAGGGAACGCTAGACAAAGCCTTGGTGCAAAAGTATCAGGAAGGCCTAACTACACTAACAGAACTGGCTGACTTTCTTCTGAGCAAGGTAGTTCCCAAGAAGGATTTGCACAGTCCCATTGCAGGCTATTGGCTGACCGCTAGTGGGGAGCGAATCTCCTTGCTGAAAGCCTCCCGTAGAAACTTGGTTGATAGGGTTACAGCCCTCAGATGCCTTGAAGCCCAAATCTGTACAGGAGGGATCATCGATCCCCTAACTGGGAAAAAGTACAGGGTGGCCGAGGCTTTGCATAGAGGGCTGGTGGACGAGGGCTTCGCCCAGCAGCTACGCCAGTGTGAATTAGTGATCACGGGGATCAGCCACCCCGTCAGCAATAAAATGATGTCAGTGGTGGAAGCCGTGAATGCAAATATCATCAGTAAAGAAATGGGCATGCGGTGCCTGGAATTTCAGTACCTGACAGGGGGCCTGATAGAGCCGAAGGTTTTCTCGAGGCTGACCATAGAAGAGGCCCTTCACGTCGGTATCATTGATGTCCTCATCGCCACCAGACTCAAAGATCAAAAGTCATATGTCAGGGATATAATGTGCCCCCAGACTAAGAGAAAATTGACATATAAAGAGGCCCTGGAGAAAGCTGATTTTGATTTCCACACAGGACTTAAGCTGTTAGAAGTGTCTGAACCCTTGGGGACAGGGATATCCAACCTCTACTATTCTTCCCAGTAGGGCGTTTGACTCTGTGCAGAGGCCGTGTCGGCTGCATCCTGCCATCTGTTCAGAGCAGATGGTGTCTGCTAAATGTGCAGCCTAGGAACTGTGTCACCAACTCGAAGCGCTGTTAATTTCTTGTAGGCTAGAAATAGCTCCCTGCTCAGAAAACACGGCCATTCTTAAGTTGAAAGCAGAAAACGATTGGCTGCCCCTGACAAAGTAACTTAAAAAAAAAAATATCTTACTAAAATAAATGGGTTTTACCTAGAAAATGGGGTGAGCTTGGTGACCATCCACACGTTCACAGGCCCGTTTCTTCTGACCTCCTTCATAGTCCTTTCACTGAATAGATTCAACACATTAATGATGTCATCCATTGTACATCCTGAAAGAGCACCTCACAGAGCACCACAGGACTGGGATCCAAAGGAACGTGCAAAAGTGCCCCCGACCCGTGAGGCTGGAGATGGCTACCTGCAGGCAGTGATGTCCTCTGCATAGCGAAGTGTTCGTCGCTGTTAACTTTTACTTTGGTTGAGACTTTGGAAATAAAATCTAACAAGTGCATTGTGTATTGGAGGAGGGGTGTCATCTGTGTGGAGTTTCTCTCTCTTCTTTTGCTCTCTCCTTTTGTCTAATAGCATCTGTCAAGGCATCTGCGATTGTAATGCTAATGTAAAGGCAGCGATTCCCAAATCTCTCTCATGAATAAAGTTGGGTTTGCTTATTTGTCATACTCCTGAAGCAGCTGGGTGGCCAGAGCAGTGATCCCAGACTGATCATAAAAGCTTTTCCCGTCCTCAAAGACATCTGCTGTGTGATGCAGTGGATGTGGTTAAGTGAATGAATAAAATATCGCAGTAACCTGTGTGCATGATGGAAACATTTGTGCCTTCTTCTTTCAGCAGAAAGGAGGGGTCAGTTGAGAAGCTCAGTCATTTATTGGAATGTTTGTTTGTTTCTTTCTTCATTTTTAAACACTTGTACCTGTCAG
Seq C2 exon
AAGTCACTGGATGAAGAGAAGAAACAACATATTGAAAAAGCTAAAGAATTGCAGAAATGGGTATCAAATATCAGCAAGACCCTGGGAGATGGGGAGAAAGCTGGGAAACCTCTCTTCTCTAAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026131:ENSMUST00000097785:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.117 A=NA C2=0.465
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types