BtaINT0053000 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021237 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr23:3515066-3525071:+
Coord C1 exon
chr23:3515066-3515164
Coord A exon
chr23:3515165-3524942
Coord C2 exon
chr23:3524943-3525071
Length
9778 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACC
5' ss Score
8.55
3' ss Seq
AAATCACTCACACCCATCAGAAG
3' ss Score
0.98
Exon sequences
Seq C1 exon
TTCATGGACCTGAGGACCCGATACACGGCTCTGGTCACCCTCATGACACAATATATTAAATTTGCTGGGGACTCATTGAAGAGACTGGAGGAGGAGGAG
Seq A exon
GTAACCATTAACCATGGGCAGGTCGCTGGCAAGGAGCCATGAGGTGGCTTCATGATAAACTCACATGGTTGAGATCTGATGTATAAGTGATTAGTTATAAAATTACAGTGAAAACCAGTAGAGACCTGGCATTTTTTGGATTGTTACTGAGATTCTGTCAAATTGAAAAGCATTGCAAAAAAAGAAACAACCATTTTGGGGAACAAAAGAAAAACATTTTTATTTTCTCTCTGGGACTCTGTCTAATATGAGAGGGTTAATGTCATAAATGGCTCTGTTTACATTATGGAATGTAGGCAGTTTAGCAGAATTGTTCCCAGTTTTCTTTGAAGTATAGTTACTACTGTTAGGATGTCTGGAGAAATATTACATAAACAAATTTGTTTTATATCTTTTAAATTAATTTACATCTTCAAGGATTTAAAACAGAAACACCATTAAGTTAGAAGTAGCAGGTATTTATACAAAATGGTAATGCTTTTTAATAATTGAGGTGTTTTGTTTTTATTTTTGTCAAAAAGATATGGTATATATTAAAAAGACTATATGCATTTAATAATATATTCAGAAACCGAATAGGGAGTTATTCATGAATGTATGTTTTTATAAGAGGCTATTATATCTAATTTTGAAGGTATTATGCTGTGCTTTGTCATCTTGATATACTTTCTATTCCTGACCTCAGAACAGACAAAAATAGTCAATTGAATGCTATAATAAGTAAAGTGTGGGATATTGGCCATTTAAATTAGACCATTGTTGAAATTCTGAAGGTGATTGTACTTAGTATAACTCCATTCATATAATAAGAGGACCAAAATGGTAGCAAATGTCTAATAGATGTTGCTTTCTTAGTTTTTAAAAAAATTGTGACTACTTTTGTAAACTATTTCTGTCTGTTCAGAGTTACTAGCACTAACATCGCTATTTGCAAGTCTTTATAACTAACTACCTTTGGGCTTAGAAAGGAGAACCAGAGTATTTTCACATCCAAATAATTGGCATACACTTCTCAACTATGAAAGGTCCACAGTTTTTTTACATTTTTAGTTTTTAAGAGATATTCCATTTTAAGTGGTAGGCAGATCTTTTAAATTGTGTATTTAGTAGTTAAAGGTAAAATAAAATAAGTTAAGGCTTTCCTTTATTACTATGTATGTCTGATTGTACACATATGAGCCACTGTGCTCAATTTATCTGATGGGGTAGAGTACCAGAAGTTGATAGACCCAAAAGATATTTCAAAAAGCCTGAAATATATCTAAATTATGCTTGTCATCCTTTGAAATGTTAAAGATTTATATTGAAGTGAAAGTCAAAATAATATAGTTTATGGAAGTCTGTGAAAAGACTATTATAATTTAGAATAGATTTTTAAATTCTTTATTAAAAATTCACCACTTAAGGGTCTTAATAATGGAGTATCTTATAAAAGATACATAGCTCAATTTTCAGATTCCACAAAGAAGTGTTTCTGAAACTGGGTCTCTAAGACCCACATGCGAAATCTTGGTCAGAGAGCAGAATTTTCCATAATAAACATGGAATCAAAGAGGGAGCCATGTTAATTTCAAAGATAATACCAAATTAGCTACAGAAATATTAGTAGGGTATCTGTAATGTATATTTAATGGATAAAGAGATTTTTCTAGTCTGTATTGACAGCAGAATATATTAATTGCTGAGATTAAGACAGCATGTCTCCTTGGGAAAAATTTAGTTAAAACTTGAAGTTATTTTATGTGAATAAGTTTGAGATACACAAGAGAGGAAATCAGTAATAGAACTAAATGATCTCTAGTAATTTTTCTGATCTTTGCTTAAAAAGATTATAGTTATCTAGGCAACATGAGATTAGCAGTCACTTAAATGATTCCAAGACACTGAGAATTTAACTTTTTTTTTTTTTCCTGAGAGAATTTTCATTTTTCTTAAACTTCAGACTATGACCAAGAAAAAAAAAGAAAGGGACTCAAAACTTCTTCACAACAGCTAAGCTGGAAAGGAAATTTGATGAGAAATGAGAAAGACCCTTTTAGAAGTTGTCTACTCAAAATATTAATATATGGAATACTTTTAATGTCTAAGAAGATAAAATGCTTCAGTGTCATTAAGAGTTGACCCTGATAACAAACAGAGCACTAAATATTACAGACTGTGATGAGATTTGTTTTCATATGAATTCATACTATAAATCATATTTAGGTTAGCAAAGGAAACAACCAAAATTCTCATCAAAATTATTGGCAATCATGTTATGAGAGGATGCAAAATAAGATGTGTGTCTGTAATACAAATCAGATTCTTAAGATTTACTAAGGCATTTCAATGAAAATAAAACCTGCTATTTAGAATAATTTCCTTCCTTCTGTTTAAGTTACTTCTAACTATGATGATTTTTAACTGATAATACAACACTAATAAGCTTATGATGTTAGTAAAGAGAAGTTAAATGTGATTATAAACTAGCTGTGATCACTTTGTTCTAGTCAAGTATGTTCCTCCCAGCTGAGATCGATTTGTAATCAATAGAGTGAACAAATTTTCTTAATTGGAGCTGAATTCCTAAGTATACTTTTATAAGCATTTATATTTAACACATATCTTTATGTTTGTGGAGTATCTGAAGGTACTTGTCAAGGTGGATTCATATGGGCCATGTCATTAATGACAGCAACAAAGTCTGTGAGTATATGAAGCACGTCTTCTCTAAAGCCACCAGGACTATGGCTGCCTTTGCATTAGCAATTCTGATTATTGTAAGTATCATAGTAGGGCAAATATAAATTAGTGAGGAATTAGATTTTAGAAAATTATAAATTTTTATATAATTTCCTCCTTCCTCCTGTTAAGTATTGTTTCCTCAATTGGCTCTTAGTTCCAGAGTTCTGTATCTTCTTTCTTTTAGATATCATTTTTAATTTCTTTTGGGCTAGAAACTGAAGACAATTCTCTCATGTCGTTCAGTTCCTATATGTTGTATGTTCTTAGCTCGTAGGACTAGGTTGTGTGTGAGTGAAAGAGGACTGCTATGAGAACTGTTGTTCCTACTTTGTCATCTGCCTGTTTTGCATGGGTTTTCAAAATTACTGAAGTTTTCTAGACCTCAGTGTCCTCATCTGAGGTGAGAGTCAGGCTGTAAGGTTCCTTCTTGCTCTAAAATCCTGAGCTAGCAAATTTTAAAAGCAAAATTATCCGTAAGAGGCAAAAAAGAAAAAGATTCCTTGGCTTAGCAAAGCCGCCACACAGGGTTTGTGGTTTCCCCCCACTGCTGACTTCCTGAAGCTCCTTCTCTGGTGGCGGTGGCGGGGCTCTGGCTGCCTTGGGTCTCCCTCCCCGTTGTCGGTCCTTTGGCGAGCGCTGCTCTGGACGCCTGCAGACGGGCTGGGGCGGCGCGGGTCTGACCCTTCTGAACGTCTCTCGTAGATGCAGAGGCGTCAGGAGGCTTCAGAGCAAGGGGTGTACTCAGACCTGCTCCAGCGGCAGGAGGCGACCGTGCGGGAGAACCGCCAGCTCGCGGGGAAGATCACAGAGCTGGAGAAGGTGCTGGCCGAGCTCGAGAGGCAGAAGTCCCGGGCGGAGCAGGAGCTCCCCAGAGTCCGGGAGGAGGCGGAGGACGCGCTGAGGAGGCAGCGCAGGGACGCGGCGGACATCGCGCTGCAGAAAGTGCGCGCGGAGAGCGAGGCCCAGCGGTACCGTCGGGAGCTGCAGGCGGTGGAGCGCGACCTGCGCGGCTTCCGGGAGCAGCTGGCGGAGCACAGCGCTGCCCAGAGGGCGCTGGAGGAGCGCCTGACCAGGAAGGACTGCAGCCTCCAGGAGCTCGAGCGGCAGAGGGGCGAGCTCATGGCGGAGCTGAGGAGGAAGAAGGCCCACGAAGCCGAACTCCTGGAGCTGATGGAACGGATGGAGAAAGACCTCACGTTCCGGAAGCAGGCGGCAGAGAAGCAGCTGGAGGGAAAGCAGAAAATCGACTCAGAAGCCCGAAGAACAGTAACAGAAATGCAGCATCCGTGCAGAGAAAGCGCGCACCCAGCTTGTCCGAATGCCGAGGCGAAGGACCTGAAGGAGCAGGTGGATGAGCTGATGGCGGCCAACAGGAGGGCCGAGCAGGACGTGAGGAAGCTGAAGTGTGAACTCGGCGCCCTGCAGCTCGAAAAAACCTCCTCGGAGGAGAAGGCCCGCTTGCTCAAAGAGAAACTGGATGAGACCAACAAGTCCCTGAGGTGCCTGAAGCTGGAACTGGAAAGGAAGGACCAGGCCGAGGAGGGGTACTCGCGGCAGCTCCAGGAGCTGGGCAGGCAGCTGAGCCAGACCACGGGGAGGGCTGCGGAGGTCAGGCAGGAGGCTGCCGACCTCACGAGGATGAAGCACAGCTATGAGCTGGAACTGGAGTCGCTGCAGCAGGAGCGGGGCAAGCTCCAGAGGGAGGGGGACCGGATCAGCAGGACGCAGGCTGCCGCCGAGAGGAGCATGCAGCATCTAAACTCACAGGTTACTTCTCCACAGGATAGCAAGGTGTCCTCTAGAGAAAGAGCATGGTCCTGCCAGAGAACGTCAGATAACCTGAAAGAGCAGTTTGAGAAAAGTCACGCACAGTTGCTTCAGAATATTCAAGCCGAAAAGGAGAATAACGAGAAAATCCAAAAGCTGAAAGAGGAATTGGAGAGAAGTAATGAGCGTGCAGACAAGCTTAGGCACAAGGTGGAGGAGCTCACCAGGCAGAATAACCAAACCAAGTTAACAATGCAGAGAATTCAGGCAGAATCGGCAGACGTGGTCTTAGAGAAACAAGCCATCCAGCAAAGATGTGAAACACTGAAACTCCAGGCGGATGGTTTCAAAGACCAGCTTCGCACCACCACCGAGCACTTGCACAAACAGACCAAAACGGAACAGGATTTCCAAAGGAGAATCAAATGCCTGGAAGAAGACCTGGCCCAGAGTCAGCATTTAGTGAGTGAATTCAAGCAGAAGTGTGACCAGCAAGACCGCATCATCCAGAACACAGAGAAGGAGGTGCGGAGTCTGAGCGCGGAGCTGAGCGCATCGAAAGAGGAGAAGCGCCTTGGGGAGCAGACGGTGCAGAGGCAGCGGGCGCAGGTGCAGGACCTGAACAACAGGCTGAAGAAGGTGCAAGACGAACTGCACTTAAAGACCCTAGAGGAGCAGGTGACCCACAGGAAGATGGTTCTGTTTCAGGAAGAGTCTGAGAAATTTAAGCGCTCTGCAGAGGAGTTTCGGAAGAAGATGGAAAAATTGATGGACTCCAAAGATATTACAGAACGTGATATTTCGGGCATCCAGCTGGACTTCGTGTCTCTGCAGCGGGAAAACAGCAGGGCTCAAGAGAATGCCAGGCTCTGTGAGACAAACATCCAAGAACTTGAGAAGCAGCTCCAGCAGTATCGCCAGCAGATGCACCAAGGGCAGGATGGGCAGGCCCATCACTATCAGAAGTGTCGGAAGCTGGAGGAAGAGCTGGTGGCCCAGAAGCGGGAGGTGGAAAACCTGAAGCAGAAGATGGACCAGCAGATAAAGGAGCACGAGCATCAGTTAGTGGTGCTCCAGGGTGAAATCCAGAAAAAGAACACAGCCATCAAGCCAGACCCTGAGATGGCAGGGAAAGAGGGTCCGGGCCCCAGGGACCTCCCCTCCACTCCCCCCGTGTCTGGGGTCCCTCTGCAGAGGTGGACTCAGGAACCACAGCCCTCGGAGGAAAGATGGCAGCGTTGGGGTGCAGAGAATGTACAGAAGGAGGTCCAGGGCAGGCCATCAGGGGCTCCAGTTGAGAAAGAGAAAATCCAGCAGTGCTACTCGGAGTACTTTTCTCAAACAAGCACCGAGTTACAGATAACTTTTGATGAGACGAACCCCATTGCAAGACTGTCAGAAATTGAGAAGCTAAGAGATCAAGCTCTGTGTAATTCCAGACCCGCCATCAGGTGTCAAGATGACAAGTATGAAATAGACCTGGTGACGCTTCTGGCGCCCTTCGAGGTATTACCTGGGTTCTGGGACTTTTACCAGTTACCCTCTGTCAAGTTTTCGCTCTTGTTTCCTTTCTCTGCTAGGCTGTATTCTTTTAGCCATATTGAATGTGATTGGCTGTTTGTAGTTCTGACAGAAAGTCATGCTATCATTTTCTAGTGATTTACCTGAATCTTTATTACAAACCATAGTCTTTAGTTTTTAAATGCTTAAGATGAAAAACACAGATGGCATGGCTATCCTGTTGGTATCAAAAGGGATTCTATTCTGAAAAATTTGACCCTAAAGAAAACTAGAAAAAGCAAGCAGTTAGTTTTAATTTCTAACACATTCTGTGGACAGGTTTCATCTCCCATCTTTTTCAGATATACCATTTTAATACTTAATAGTCATCTAAAGTTTAAACTTCAGACTCTCAAAATAGCATTCCTTATTCATGAACCCTCTGGGGCTTAACAGTTTTTTTCTCTTATGTAATCTTTGTTATGCTAAGAATTATATTTGGATTAGGAGTGGGTAACGTGAGAACGTTCTTTAGATGACTTTTAACATCTTGTAAATTCCTGTTACAGATAGCTAAGAGCAAGCAGTGTGCTATGCGTGCGGAAGTCACAGCATTAAAGCAAGAGAAGAATCCAGCCCCTGGCAGTGATGAATGGATGCTCGAAGGGTGCAGGGCAGCGGGTGGGCTCAAGAGAGATTTTCTAAACAAAAACTCAGAACCAGAGACCTTTCAGAACTTTGATGGTGATCACGCATGCTCGGTCAGGGATGATGAGTTTCAGTTCCAAGGGCTCCGGCACACCGTGACAGCCAGGCAGTTGGTTGAGGCTAAGCTTCTGGACATGAAAACAGTTGAGCAGCTGCGACTTGGTCTTAAGACCATTGAAGAAGTTCAGAAAACTCTGAGCAAGTTTTTGACAAAAGCCACTTCCATCGCAGGGCTTTACCTGGAATCCACAAAAGAAAAGATTTCCTTTTCCTCAGCTGCCAAGAAAATCATCATTGACAAGATGATGGCTTTAGCGTTTTTAGAAGCTCAGGCGGCCACAGGTTTCATAATTGACCCCGTTTCAGGGCAGACCTATTCTGTTGAGGATGCAGTCCTTAAAGGTGTGGTTGACCCTGAATTTAAAATCAGGCTCCTTGAGGCAGAGAAGGCAGCCCTGGGCTATCCATGTTCCTCTAAGGTGCTGTCAGTGTTTCAGGCCATGGAAAATAGAATGGTTGATAGACAGAGGGGCAAACATATATTGGAGGTGCAGATCGCCAGTGGGGGCGTCATCGACCCCACAAGGGGCATTCGGGTTCCCCCAGAAGTTGCCCTGCAGCAAGGACTGCTAAATAATGCCATCCTGCAGTTTTTACATGAGCCCTCCAGCAATAGCCGCGTCTTCCCTAATCCCAATAACAAGCAAGCCCTGTATTACTCGGAATTACTGCGCATGTGTGTCTTTGATGTAGACAGCCAGTGCTTTCTGTTTCCGTTTGGGGAGAAGAACATTTCCAATCTCAATGTAGCAAAAACTCACAGGATTGCTGTTGTAGATACTAGGACGGGAGCAGAGCTGACTGCCTACGAGGCTTTCCAGAGAACCCTGATTGAGAAAAGTACATACCTGGAGCTCTCGGGGCAGCAGTATCAGTGGAAGGAAGCCACGTTTTATGAGTCCTATGGGCAGCCTTGTCACATGCTGACTGATGCTAAGACCGGATTACAGTTCAGTATCAGCGAGGCTGTAGAGCAGGGAACTATCGACAAAGCCGCCATCAAAAAGTATCAGGAAGGCCTCCTCACGCTCACAGAACTTGCCGATTCCTTGCTGAGCCAGTTGGTCCCCAAGAAGGATGTGCACAGTCCTATTGCGGGTTACTGGCTGACGTCCAGCGGGGAGAGGATCTCTGTGCTAAAGGCCTCCCGTCGGAATCTGATCGATCGGATCACTGCCCTCCGATGCCTTGAAGCCCAAGTCAGCACCGGGGGCATCATCGACCCGCTGACCGGCAAGAGGTACCGGGTGGCCGAGGCCTTGCACAGAGGCCTGGTGGACGAGGGCTTTGCCCAGCAGCTGCGGCAGTGCGAGCTAGTGATCACGGGGGTCAGCCACCCTGTTACCAACAAAGTGATGTCCGTGGTGGAAACTGTGGGTGCAAATATCATCAGTAAGGACATGGGAATCCGATGTCTAGAATTTCAGTACCTGACAGGGGGCCTGATGGAGCCCCAGGCTCAGTCCCGCTTGTCCATTGAAGAAGCTCTGCAAGTAGGGATTATAGATGTCTTCATTGCTACGAAGCTCAAAGATCAAAAGTCCTATGTCAGAAACATCCTGTGTCCCCAGACGAAAAGAAAGCTGACATACAAAGAAGCCTTAGAAAAAGCCGATTTTGATTTCCACACAGGACTTAAACTCCTAGAAGTGTCTGAACCCTTGATGACAGGAATTTCCAGCCTCTATTATTCTTCGTAACAGGGCATGTTCACATAAGCAGTCATACGGGAAATGCTGTGTTAGTTCTCATTGCTGTGCCCACAGCTTAATGATAAGATCCACACTCTGGTCACTGTCACACGCTGGAAGCACCATCAGTTTCTTGAGGGCTGGAAACACTGACTGCTCAGAAGAGAGAATACTTTTCATTTATAATTTTTTTTTAAATAAAGTTTTATTGGAACGCAGACACACTCTTATGTACATACTGTCTTTGGCTTACTTTTGGGCACAAGGACAGAGTTGAGTAGTTCTGACAGTGACCGTATGGCTCCCAGAGCCTGAAATACTTGTCCTCTGGTCCTTTACAAAACACAGTTGCTGTCTCCTGATCTGGAAGAAATTTGCATCGCTCCTCTAGACTAAATGTCAGGTTACTTGGATTTTAGACTCCAATCTGCCCGAGAGAGAATATGTTTAAAATTGAAAATAACAAAATATTTACTGCTCTTCATAATGGTTCCATTTAGCTTTGATTTGTTTTTTGAACTCCTACCCACAGTAAAATAAAAGTATTTTACCTGGAATATGAGACAAGCTTGAGAAACATCACTGAGTTTACAGCATCCTTACTTGAGAATTCTGCATCCCTGATGGGATCCAGCCTGCCATTAGGGTTCCCATTTGTTCAAGGATTCATTACACTCACCGAAAGAACACTTCAAAAGCACCATGAAATCCAAGGGGAAATGTGTATTTGTTCCCATATCCGTGAAGCTGTGGTGGTTCAGATCACCTTGAAAAATGCATGTTTTTAGTTTTTCTGTATGTTGTAATCTACATATAATATGTTTACCACCATCTCCCATTTCTAGTTACAACTTTGTAATTAAAAGCAGCGTTGTGAGTGGTTTACCTGCTGCAGGAGGGGGAAGGTTTTTCTTAGTTCTGTGTGTTTTTTTTTGTCTTTTGTAGACTTCATTTTTTCAGCATGCCATTGTCTTAGATTTTTCTGTCTAGAGAATTCTGATTGTAATGCTAATGCAAAGGCAGCGATTCAAAGAGTGCTTCATGAATAAAGTTGAGTTTTTGAATATGTCATGTTAATAGACCAGCTGGGAGGTTAGATTGATCATTCAAAAGTGTTTGTCACAGTTTGCTTTGCTACCCTAAATTTTTGGAAGTACATCTGCCACGTGATGTGTTGAATGTGGTTAAGTGAATGAATAAAATATCTCAGTAACCTGTGTGTGATGAAAAAAATATTTTTACATCCTTGTTTTCTGTGAAGTGATTAATAGTTTGGTCATTTACTGGAATATGTCTTTTTTTTTTTTTAAATCACTCACACCCATCAG
Seq C2 exon
AAGTCACTGGAAGAAGAAAAGAAAGAGCATGTTGAAAAAGTCAAAGAATTACAAAAATGGGTATCAAATATCAGCAAGACATTGAGAGATGGAGAGAAGGCTGGAAAGTCTTCCTTTTCTAAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021237:ENSBTAT00000061451:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=NA C2=0.262
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]