HsaINT0058506 @ hg19
Intron Retention
Gene
ENSG00000167880 | EVPL
Description
envoplakin [Source:HGNC Symbol;Acc:3503]
Coordinates
chr17:74019581-74020201:-
Coord C1 exon
chr17:74020102-74020201
Coord A exon
chr17:74019736-74020101
Coord C2 exon
chr17:74019581-74019735
Length
366 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGCCCATCTCCTGCCCACAGGAC
3' ss Score
11.86
Exon sequences
Seq C1 exon
GGCTGCCACCCAGGAGCTGGCCCTTCTCATCTCCCGCATGCAAGCCAACGCCGACCAGGTGGAGCGGGACATCCTGGAGACGCAGAAGAGGCTGCAGCAG
Seq A exon
GTGAGGCCCCGGCAGCAGTTGGCAGGGCGTGGACAGGCTGGGTGGCATGGGAGGCCCATCATCAGGCCTGGCACTCCCTGAGTGCCCCTTGGTGATGGTGAAGATGGGACAGATGACCTTTGTCCTGCACCGCCCATCCCCTAACACACGGTGGGAGAGAGGGCTCAGCTTCCTTCTTTTCTGGGCTCCCCTGTGTCCTTGTCACCTGCCCCACGGACGCCCTGGTCCTGACCCTGTGCCTGGCGTGGGCCTCAAGGTTGGCTAGCATAGCTGGGGTCCCAAAGTTGGGGCTCAGGCCCACAGTGATGGGCAGCAGGGGTGTGGGGGCTCTGGGCCCTGGCCAGTCTGCCCATCTCCTGCCCACAG
Seq C2 exon
GACCGGCTGAACAGTGAGCAGAGCCAGGCCCTGCAGCACCAGCAGGAGACGGGCCGCAGCCTGAAGGAGGCTGAGGTGCTGCTCAAGGACCTCTTCCTGGACGTGGACAAGGCCCGGCGGCTCAAGCACCCGCAGGCTGAGGAGATTGAGAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167880-EVPL:NM_001988:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.765 A=NA C2=0.596
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGAGCTGGCCCTTCT
R:
TCCTTCTCAATCTCCTCAGCCT
Band lengths:
246-612
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)