BtaINT0058355 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010517 | EVPL
Description
Bos taurus envoplakin (EVPL), mRNA. [Source:RefSeq mRNA;Acc:NM_001205676]
Coordinates
chr19:56259324-56260166:+
Coord C1 exon
chr19:56259324-56259423
Coord A exon
chr19:56259424-56260011
Coord C2 exon
chr19:56260012-56260166
Length
588 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
3' ss Seq
GGATGCCTTCCCTGCCTCAGGAC
3' ss Score
6.47
Exon sequences
Seq C1 exon
AGCTGCCACTCAGGAGCTGGCCCTGCTGATCTCCCGCATGCAGGCCAACGCCGACCAGGTGGAGAGGGACATTCTGGAGACCCAGAAGAAGCTGCAGCAG
Seq A exon
GTGAAGCTGGGGAAGATGGCAGGGTGTGGGGGCGTGAGAGACTTGTTGCCATGCCTGGTGGTCCCAGAGGTGCCCACTCGCCTTGGTAAAGATACACAGACGGTCCTGTCCTTCCCTGGTCACTCCCCAAACACAGTGGAAGCGAGGGCTTGGCACACCTTCTCTGGTGGGTTCCCACCGCCATGCCCTCCCCTGTCCCTTCATCGTCATCATGGCACCCCTTCTATAGTGACGTCAAAGCAGAGCTCTTCACCTGATGTTCCGGGGGCCCTTGACCTGGTTCTGCCTACCTGCTCAGTAAACCCCATTTTCCATTTCTCCCCAGGCTTTCTCTAGGCAGGAACATCTGTTCCTTTTTTCTGAAATGTGCTGTCCTCACCACTTCACCCCATCCCCCAAAGCCCTCCCACCTGCAGGAAGGCCTCCGTGATTGGTTCCTGCAGGGGGGTCAGAGGACCTCCCCTGTGTCCCTGAGTCCGCCTCACTGGTGCTCACACTTCGCTCTCTCCCGGTGTGGGCGCCAAGGTTGGCCAGGGTCCCTGGGATGGCAGGGGGGCTCGAGCAGCAAGGATGCCTTCCCTGCCTCAG
Seq C2 exon
GACCGGCAGCACAGCGAGCAGCGCCAGGCCCTGCAGCACCGGCAGGAGGTGGGCCGCAGCCTGAAGGAGGCCGAGGTGCTGCTGAAAGACCTCTTCCTGGATGTGGACAAGGCCCAGCGGCTCAAGCACCCACAGGCCGAGGAGATCGAGAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010517:ENSBTAT00000013898:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.765 A=NA C2=0.538
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGCCACTCAGGAGCTG
R:
GATCTCCTCGGCCTGTGGG
Band lengths:
247-835
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]