Special

MmuINT0059576 @ mm9

Intron Retention

Gene
ENSMUSG00000034282 | Evpl
Description
envoplakin [Source:MGI Symbol;Acc:MGI:107507]
Coordinates
chr11:116095683-116096345:-
Coord C1 exon
chr11:116096246-116096345
Coord A exon
chr11:116095838-116096245
Coord C2 exon
chr11:116095683-116095837
Length
408 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CGTGGGTCATGTCTCACCAGGAT
3' ss Score
7.9
Exon sequences
Seq C1 exon
GGCTGCAACCCAGGAACTGGCTCTGCTCATCTCCCGCATGCAAGCCAACGCTGACCAGGTGGAAAGAGACATTTTGGAGACGCAGAAGAAGCTGCAACAG
Seq A exon
GTAAGGACTCTGTCAGGACAGGAAGGGAGGGGCATGGAGCCCCAGGGTCAACGCCAGAGAGTCCCCAGAGGGTCTCCTGTGAAGAGAGATCTGTCCACAGCCCACCACAGCCGAAGGGAGGGCTTTCCTTCTGCACCCTGCTCCCTGCTTTAGGGGTCAAATAGAGGGACATTTTGCATCCTGCCTCAGCCAAAGTGAGAAACGGGGTTTAGTGTGACAGCTGACCTAGGTGTCCTTGCCACCTGCTATATGGATGCCCTAGCCTTCTGCTTGGTGATCCCCAAGGTGGGGTGGTCCAACTAGTCCCAGGGCCTGGTGGGGAGAGCTCAGTCCAGCAGGGCCAGGTCAGAGAGAACATTGGGGAAGTTGTGAGCCTCTGAGCCCTGCACGTGGGTCATGTCTCACCAG
Seq C2 exon
GATCGGCAGAATGGTGAGCAGAACCAGGCTTTACAACACCAGCAGGAGACTGGCCGCAACCTGAAGGAAGCGGAGGTACTCCTCAAAGATCTCTTCCTGGATGTAGACAAGGCGCGGCGGCTCAAGCACCCACAGGCTGAGGAGATTGAGAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034282-Evpl:NM_025276:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.824 A=NA C2=0.635
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000037850





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr17:74019736-74020101 
HsaINT0058506
(EVPL)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr19:56259424-56260011 
ALTERNATIVE
BtaINT0058355
(EVPL)
Chicken
(galGal4)
chr18:4533444-4533567 
LOW PSI
GgaINT0128787
(EVPL)
Chicken
(galGal3)
chr18:4549370-4549493 
LOW PSI
GgaINT0128787
([1])
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GGCTGCAACCCAGGAACT

				
R: 
CTTTCTCAATCTCCTCAGCCTGT

				
Band lengths: 
254-662

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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