MmuINT0059576 @ mm10
Intron Retention
Gene
ENSMUSG00000034282 | Evpl
Description
envoplakin [Source:MGI Symbol;Acc:MGI:107507]
Coordinates
chr11:116234369-116235031:-
Coord C1 exon
chr11:116234932-116235031
Coord A exon
chr11:116234524-116234931
Coord C2 exon
chr11:116234369-116234523
Length
408 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CGTGGGTCATGTCTCACCAGGAT
3' ss Score
7.9
Exon sequences
Seq C1 exon
GGCTGCAACCCAGGAACTGGCTCTGCTCATCTCCCGCATGCAAGCCAACGCTGACCAGGTGGAAAGAGACATTTTGGAGACGCAGAAGAAGCTGCAACAG
Seq A exon
GTAAGGACTCTGTCAGGACAGGAAGGGAGGGGCATGGAGCCCCAGGGTCAACGCCAGAGAGTCCCCAGAGGGTCTCCTGTGAAGAGAGATCTGTCCACAGCCCACCACAGCCGAAGGGAGGGCTTTCCTTCTGCACCCTGCTCCCTGCTTTAGGGGTCAAATAGAGGGACATTTTGCATCCTGCCTCAGCCAAAGTGAGAAACGGGGTTTAGTGTGACAGCTGACCTAGGTGTCCTTGCCACCTGCTATATGGATGCCCTAGCCTTCTGCTTGGTGATCCCCAAGGTGGGGTGGTCCAACTAGTCCCAGGGCCTGGTGGGGAGAGCTCAGTCCAGCAGGGCCAGGTCAGAGAGAACATTGGGGAAGTTGTGAGCCTCTGAGCCCTGCACGTGGGTCATGTCTCACCAG
Seq C2 exon
GATCGGCAGAATGGTGAGCAGAACCAGGCTTTACAACACCAGCAGGAGACTGGCCGCAACCTGAAGGAAGCGGAGGTACTCCTCAAAGATCTCTTCCTGGATGTAGACAAGGCGCGGCGGCTCAAGCACCCACAGGCTGAGGAGATTGAGAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034282:ENSMUST00000037007:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.824 A=NA C2=0.635
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCAACCCAGGAACT
R:
CTTTCTCAATCTCCTCAGCCTGT
Band lengths:
254-662
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types