GgaINT0128787 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:4549274-4549648:+
Coord C1 exon
chr18:4549274-4549369
Coord A exon
chr18:4549370-4549493
Coord C2 exon
chr18:4549494-4549648
Length
124 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CTGTTTTTCCTGGTCTCCAGGAT
3' ss Score
10
Exon sequences
Seq C1 exon
TCAAGCAATGATCTGGCCGTGCTCATCGCCCGCATGCAGACGAATGCTGACCAGGTGGAGAAGGACATCCTGGACACACAGTCCCTGCTCGCGCAG
Seq A exon
GTGAGATGTGGCACGGGGCAGTGGGACAGCAGAAGGCTTTGGCTGGAAATGTAGAGCTTGGAATGACAGGTGGGGTTTCTGCTCTGTGCATCAGACTTTTCTCTCTGTTTTTCCTGGTCTCCAG
Seq C2 exon
GATGTCAGCAATGAGCAGAAGAACAAAGCCTTCGAGTTCCAGGCAGAGAATGCCAGGAACCTCAAGGAGGCAGAGACACTGCTGAAGGACCTCTTCTTGGACGTGGACCGCGCCAAGAGGCTGAAACACCCCCAGGCTAACGAGATAGAGAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002108:ENSGALT00000003290:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGCAATGATCTGGCCGTG
R:
TATCTCGTTAGCCTGGGGGTG
Band lengths:
243-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]