RnoINT0057015 @ rn6
Intron Retention
Gene
ENSRNOG00000009343 | Evpl
Description
envoplakin [Source:RGD Symbol;Acc:1306141]
Coordinates
chr10:105113582-105113992:-
Coord C1 exon
chr10:105113893-105113992
Coord A exon
chr10:105113737-105113892
Coord C2 exon
chr10:105113582-105113736
Length
156 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
CATGGGTCATGCCTCACCAGGAT
3' ss Score
6.2
Exon sequences
Seq C1 exon
GGCTGCAACCCAGGAACTGGCTCTGCTCATCTCTCGCATGCAAGCCAATGCTGACCAGGTAGAGAGGGACATTTTGGAGACTCAGAAGAAGCTGCAGCAA
Seq A exon
GTAAGTCCCTGCCAGAGCGTGAGGGGAGGGAAATGGAGGCCCAGGGCCTGGTGGGGAGTGGTCAGACCAGCGGGGGGGGGGGGACAGGTCAACAAGAACATTGGGGAACTTGTGGTGAGCCTTTGCGCCCTGACCACATGGGTCATGCCTCACCAG
Seq C2 exon
GATCGGCAGAATGGTGCACAGAATCAGGCACTACAGCACCAGCAGGAGACGGGCCGCAACCTGAAGGAAGCGGAGGTACTCCTCAAAGATCTCTTCCTGGATGTAGACAAGGCTCGGCGCCTCAAGCACCCACAGGCTGAGGAGATTGAGAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009343:ENSRNOT00000012373:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.794 A=NA C2=0.615
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACTGGCTCTGCTCATCT
R:
TTTCTCAATCTCCTCAGCCTGTG
Band lengths:
242-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]