HsaINT0063003 @ hg19
Intron Retention
Gene
ENSG00000171931 | FBXW10
Description
F-box and WD repeat domain containing 10 [Source:HGNC Symbol;Acc:1211]
Coordinates
chr17:18673240-18675996:+
Coord C1 exon
chr17:18673240-18673398
Coord A exon
chr17:18673399-18675724
Coord C2 exon
chr17:18675725-18675996
Length
2326 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CCCTGTTGTTTCGGTTCCAGGAT
3' ss Score
10.35
Exon sequences
Seq C1 exon
GGAGGTGCTCGACGTGTCCCTTCTCTTCCTCCGGGTCATCAGCGCCTGTGCAGATGGCAAGATCCGAATTTACAATTTCCTCAACGGGAACTGTATGAAGGTGTTAAAAGCCAATGGCAGAGGTGATCCTGTGCTGTCCTTCTTTATTCAGGGCAACAG
Seq A exon
GTGGGTGGTAGGTGTGGAGGTCAGAACTGTGAGTGATTCTGTTGGATTTTTTGATTTTTTTCCTCCCCTGGGATACCAGCCCTGGATTTGCTGTCAGGAGGAGAGAGTGTGCAATGCCTCTCTACAATTCTGGCTGGGTGGAGCAATAGTCTTGTGGTGGGGACTAACAGGGCTTTGCACAAAACTTAGTAATCAGGAAGCAATCAACTGTTCATTTTGACTTTTTTTTTTTTTTTGAGACATAGTTTCACTCTGTCGCACAGGCTGGAGTGCAGTGATGTGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCAATTCTCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCCCACCAGTATGCCCGGCTAATTTTTAGTATTTTTAGTAGAGACGGGGTTTCACCATCTTGGCCAGGCTCACCTTGAACTCCCGACCTCGTGATCCACCCGTCACGGCCTTCCAAAGCGCTGGGATTACAGGTGTGAGCCACCACGCCCGGCCTGTTTTGACTCTTAATTCATCCTAGGTGTTTGTGGGAATTGCAGTGGGTGCAACATAACGCTTCTGTAAGGACCACAGTTCTACCAATGTGCAGCCCCTGCTTGCTCTTTGATCATGCCTTTGGCTGCCTGAGAGCTCTATCAGCTATCTTTGATGCCTCACTTCTAATGCAAAGAGACATTATAGGAGAGTGGAGGGTGGCAGCAGCAGGGGGTACAGTGGGGGAAAGCTGAGCTGGTGAGCTTACAAAACCAGTACCATGACTGACTGCATTGTATACAGTACTGTGCTTTATATATGCGTAGACTCAGGGTGCTATTATATGAAAATAACCAAATAGAACTAACCTGTAAATTCTACTTCAAGCTCACTTGAGACATCTCTTAATGTCCCTAAACCATATTGCCTTCCTTTTAGTGAAACTTTATTAGTATTATTTACCATCTTAAAGAGGGCAGCCTGGTAATAAGGCTCAATTAATGAACACTTTTCAGTCATGCTGCTAAAAAAAAAAAACAAAACAAAACTCTGGCCATTTTTTACTCACAGCATCCAAAGAAAGGTGTTTTTCTTTCGGCTTGAGTGAACGTAAGTCTAAAAGGGATTTCTTATTGGAATGACACCCCGCATTCCATTCCAGCAGTTCCAGCCAAAACAAGTTACTTTTCTAGAGAGTTTATGCTGTTGGTTAAGGTCTTAACACTGCAGCCTTTTGAAGCAGAAAGAAACCTGTGCAGAGTATTTTCATTTCTTGTTTATAGTTAAGGGAAGAGCACAGAAAGGGGAAAGCCGCTTGCTTGTAAAACTGGTGGGTTAGGGAGGCAGTGCTGTGGGGGCACAGGAAGGGGACAGGGAGGGCAAGTTCCGGAGCTCTTTGTCTATGGAGCATTAAAGTGGGGATCAGAGAAGTTAGAAATCATCTCACTTTATAAAGTATAGATGTTCTGTCTACATCTAGAGTGTGTGCAGAGATCCTGGAGTGACAGCATGGAGTGTGTGGTGTCTGCGTGGAGGGTCTATGAAGGAGAAGAGGCCTCCCCATTAGAGAGCTTTCCTCATTCCCAGCAGCAATAGTAATATTGGGTTTGGAAGCTGTGCTTAAAACAAACAAAGAAACAAAAACACTGAATTTCAAGACATCTGTGTGCAGAGTACCTTCTTGGCACCCTAGGTACGTGGCACTCACTCCAGGAACAGAAATTCATTTAAAAGCATTTTAACTTGAGGCCAGGCGCAGTGGCTCGTGCTTGTAATTTCAGCACTTTGGGAGGCCCAGGTGGGTGGATCATTGAGTCCTGGAGTTTGAGCCCAGCCTGGGCAACATGGCGAAACCCTGTCGCTACTAAAAACACAAAATGAGCTGGGCGTGGTGGTGCGTACCTGTAATCCCAGCTACTCAAGAGGCTGAGGCACGAGAATCGCTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCTGAGATCATGCCACTGCACTCCAGCCCGGGTGACAGAGCGAGACTCCTTCTCAAAATAAAAAAATAAAAATAAAAAATAAAAAAGCATTTTGACTTGAGAAGTGAAACAATCGGAACATATGTGCCCCGATCATGTTTATTTTTTAAAGAAAAGAGTGACAAAGCTAACGACTCCTGCTGCATCTCCTGGTAACTTTCACCACTCTCCACCCTCCAGCTGCCTACACTACTAGTCTGTTTGGTCATCACCTGGGCACTGTTCCTTTAGTCTAAAGACCAGGTGGGATGGTAACTGCAGTGCATCTTTCGGTGGCCTCCACAGTCCTTTTGTGGACAACCCTGTTGTTTCGGTTCCAG
Seq C2 exon
GATGGTGGTCAACACAGAGAGCAATGTTCTCATGTTCCAGTTTGAGCACATAAAGTGGCAGTATGCCGTGGAAAAAACGAAACAAAAGAAGAATAAGGAGAAAGAGGAGGAAAAAGAAGAAAATAGTCTCATGGAAATTCTCTCTAAGTGTAATATTCAGGTTCACAGCCCAAGAGAGTCTGTATCCAGTAAACAAACTGTGATCCAAGAGCTCCTACCAGGCAAACCTCCCAAGTCCCGAGTACTCCTGAAGCCGGCCAAGTTCTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171931-FBXW10:NM_031456:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.266
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)