BtaINT0000494 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MLX8]
Coordinates
chr19:33601282-33602275:-
Coord C1 exon
chr19:33602199-33602275
Coord A exon
chr19:33601482-33602198
Coord C2 exon
chr19:33601282-33601481
Length
717 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATA
5' ss Score
7.96
3' ss Seq
TCATGTTGCTTTGGTTCCAGGAT
3' ss Score
7.45
Exon sequences
Seq C1 exon
CTATAGGCGACCTAGGAACCAGGGTTGGGGAGCAGCGCCCTGTGAATGCTGTGAACCCCAGGAACAATGGGTGGGAG
Seq A exon
GTAATATTTGGGGTCCCGGGTTCAGGGGGGATTAGGGAAGATGGAAACCCTCCTGCTTTCCAAATACAAATGTCCTGTCTGGATATAGAGTGTGCACAGAGATCCTGGAGTGATGGAGTGAAGATTGGGGTAGAAAGTCAGCAAGGGCTTGAAGACTTCCCCCATTAGCGAGCTTTCTCATCCCATCATGACAATAGACATGTGGCATTTGGATGCTGTGCTTAAGAAAGGAGTGGACTTCCAGACATTTGTGTGCAGAGTAGCTAAGCTTTCTGCCTCGGGTACCTAGGTCCTTAGCACTTACTCCAGGAACAGAAATTCACTTAAAATGTTTTAACTCGAGAAGTGAAGTAATCAGGACACGTGTGCTTTGCTCACAACTCATTTTTAAAGAAAATAGCTACAGAGCTAATGAGTTCTGCTGCATGGCCTGCTACCTTTCTCTGCTCTAGACCCTGAAACAACCTACACCACCCTGTTTGTGTGGTCATTTCCCCAGCACTGATCTCTTGGCTCAGGATCCAGTGGGACAATAGTCCTAATGCATATTTGGAAGCTGGGGCAATGGCAGCCTCCACGTTCCTTTTAAGGGTATGTGGGATCTTAGCTCCCCGACCAGGGATTGAACCCGCTCCCCCTCACTGGGAGGTGTAGTCTTAACTACTGGACTACCAGGGAAGTCCCCTTTTGTGGGCAATCATGTTGCTTTGGTTCCAG
Seq C2 exon
GATGGTGATCAACACGGAGAGCAACGTCCTCCTGTTTCAGTTTGAGAATATCAAGTGGCAGTACTCAGTGGAACGGGCCAAACAAAAGAAGAAGGACAGAGAGGAGGACAGGGAAGAAAACAGCTTTGCAGAAGTCCTCTCCAAGTCTAGCACCCAGTTCTACAGCCCAAGGGATTCTGTGTCCAGCAAGCAGACAGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002605:ENSBTAT00000003367:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGGCGACCTAGGAACCAGG
R:
CTGTCTGCTTGCTGGACACA
Band lengths:
272-989
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]