GgaINT0128994 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:2199934-2201184:+
Coord C1 exon
chr18:2199934-2200089
Coord A exon
chr18:2200090-2200984
Coord C2 exon
chr18:2200985-2201184
Length
895 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
CGTCCCCTTTCCTTCCCCAGGAT
3' ss Score
12.69
Exon sequences
Seq C1 exon
GGAAGTTCTGTCTCTGGAGTTGCTCTTTCTCAGAGTCGTCAGCGGCTGTGCTGATGGGAAGATCCGTGTGTTCAACTACCTGACTGGGAGCTGCCTGAGAGTGCTGGTGGGCAGCAGCAGGGGGGACCCCATATCTTTCTGTGCTGCCAAAAACAG
Seq A exon
GTTGGTGACAACAGCTGCAGTCAGACCCTACCAAATTAGGTAGATTAGATTGTAATTTAAGAAATTGTGTATTCTGCCACCTATCTTTCTTGCAAATAAGTTTTAAAGGGCTTTACTGCTTCTGGACTGCTTTGACAAGTTGTTTTTATTAACAGTGGCTGAAAATGATTTGCTTGGTTCTTTCAGCAGTCTAAAATTTCCCATTTCTATCTGATTTAAGGTAAGAACTGAACTGTAAAGCTGAATTCAAATTACTAAGAGGCTGGAGAAACAAGCCAGGGCCTGACAAAGCCTCTGCTTGCCCCCTGACCTGTCTCAGTAGAAAAGCCAACAATGGAAAATGCTTCCAGGTTCCTTCATATCCACACCTCTAAGGGTGGTTCCCAGCTTCAGGATAAGTGAGAGCTAAAACACCAATGTGTTGTGAACACTCTTTTGGTTGTGACCCTAAAATGCAGTACTAGGTGAGCTGTTAGGAGGAAAACTAACTCCATCCCAGCCAGTCCCAGAACACCCCTCTACTTCAGGTTTAAGGCCCCTGATCATATGGTGTCTCCAATTTCCTGTGACATTGCATTGATCGAATTCAGTCCACTGTTGGGACATTTTTATTTTATTTCATTAACTTTCATCCTTTGTGGCAATGAATTTACCATGGTGTGGGATGAGAAGAGCTGCCAAGAGCTCAGGCAGACTATGTGCATTAGAAGTACGGTGTCTGATTGATGGGACTAATTGCTACTGCTTTTTTCTTTCTCAAAGAAGTGATCATTTTCTCAGTTCTGTTTAATTACCCTCAGGGTTTGTATTACACAGAAGCAAATGGACCTGTTAGGCAGTACCTGCTGCGTTAATGATGTTCTTGCTTTTAAGAGCGTCCCCTTTCCTTCCCCAG
Seq C2 exon
GATGGTGATCAATGCACCCAGCAGCCTGCTGATGTTCCAGTTTGAGGATGTCATGTGGGACTACATGCTAGGTGCTGAGCGAGATATGGTGTGGAAGGAGAAGCAGGAGAGCTGCCCTTTGGGCACAGCACTGACTCCCTCCCAGCAAACCAAGAGCCACATTGCCAGCCAGATGCGACGCCTCACTCTGAAGACACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001323:ENSGALT00000002016:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.265
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCTGTCTCTGGAGTTGCTCT
R:
GTGTCTTCAGAGTGAGGCGTC
Band lengths:
350-1245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]