MmuINT0063424 @ mm10
Intron Retention
Gene
ENSMUSG00000090173 | Fbxw10
Description
F-box and WD-40 domain protein 10 [Source:MGI Symbol;Acc:MGI:3052463]
Coordinates
chr11:62873371-62875189:+
Coord C1 exon
chr11:62873371-62873544
Coord A exon
chr11:62873545-62874941
Coord C2 exon
chr11:62874942-62875189
Length
1397 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
3' ss Seq
CTCTCTCATTTTGGTTCCAGGAT
3' ss Score
9.46
Exon sequences
Seq C1 exon
GGAGGTGCTGCAGGTGTCTCTCCTCTACCTCCGGGTCATCAGTGCCTGTGGAGACGGCAAGATCCGAATTTATAATTTCCTCAATGGGAACTGTCTGAAGGTGATAAAAGTCGACGCCAGAGGTGACCCCGTGCTATCCTTCTTTTATCAGGGCAACAGGTGGGTGGTAGGCAG
Seq A exon
GTGCGGAGCGCAAAGGCATGGGTCATTCTATTCGGTCTTTTCCTTTCTCCTCTGGGACTCTGGCTTCATTGGCAGAGCACAGCAGGCTGTGCTTTCTTCCAGTTTGGCTGAGGGAAGTAGTCTCCTGGGGGACTAACTGGCCTTTGCCCCAGACTTAGTGATCAGGGTCCAGTCAGAGCTGTGTGTACGCTTAAGTGGGGCATAATGGCCAGCTTGGAGGGTTTCCTTTAAGTCGGAGTAGAAAGAAACCTGAGGGAGACTCCTTAATGGGACCTGATCCCCCAAACTCTGGACTAGCATTTCCAGTCCAAACGAGGCACTTTTCCAGAGTTTACATTATAGGTGAAAGTCTTAAAAGTATGGCACTTAGGGAGGAAATACACACACACACACACACACACACACACACACACACACACGGGGGGGGGGGAGCGGGAGAGTATTTCAATTCTTATAGTTCTAGGAAATCTAGACACACAGAGGAAAGCAGTTTGCTTTGTACAAATGAAAAAAAAAACATCAAAGTGAGACGGGCAGTTGTGGTGCACACCTTTAGTCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCCGGTCAACAGAATGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTTGGAAAGAAAAAAAAACACAAACAAACAAACAAACAAAAAATTCAGAGAGAAAGAAATGTGTGGGGGATGAAAGGTGTCCTGGGAGTGAGAAACCTGAGTTCTAAACCTGTGACGTGAGAGCAAAGAGTCAGGCAATAGAAGTCACCATGCTTTATAAACTGTCTCCACTATATCCAGAGACCCTGGAGGATGCTGGGAAGTCAGGTGGAAGCTTAGCAGAGGAAAGGAGACTTCCCCATTGAGAGGTTTTGTTGTTGTTGTTGTTGTTTTAATTTAAAGAGTAAAAATAGAAACACTTGAGTCTAGATATTGAGCTCAAAAAGAAGAAAAGAGTGAATTTCCTGACATCTGTGTGAGGAGTGTCATCTAAGCTTTTGTCTTGGGCATCCAGGTACTTGGATTAGGTACTCCAGAACTGGAAATTCACTGGAGAGGTATTCCAACCTGAGCGGTGGAGGAATCAGAACACGTGTGTCCCTTTCATGATTAATTCACAAAGAAAACAGTTACAAAACTACCCACCCCTGCCTGATGCTCCACTTCCTCCTGGCAGCACCCTGAACCAGCGCGTTCCTGGGGCCACTGCCTTGCCACAGCTCCCTCAGCCTAGGGATTAGTCAAGATCCAACTGCCATGCATGTTCTGGTGACTGCCATGTATGCTCTGGTGACCTCCATGTATGCTCTAGTGGCCTCCATGGTCCTTCTGTGGGCACTCTCTCATTTTGGTTCCAG
Seq C2 exon
GATGGTGGCCCACACGGACAGCAACATTCTCGTGTTCCAGTTTGAAAATGTCAAGTGGCAGTACAGCTCAGACAAGAACAAAGTAAAGAAGAGCAAGGACAAAGAGGAGGAGAGGGAAGAGACCAGCCTCGGGGATGAGCATTCCAGGTCTACCATTCAGGGGCACAGCCTGAAGGACTCTGTGTCTAGTAAACAGGAGTTCTCAAAGTCCCGGGTTCACCTGAAACAAACCAAGAACCTATCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000090173:ENSMUST00000176577:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.464
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCAGGTGTCTCTCCTCTA
R:
ACACAGAGTCCTTCAGGCTGT
Band lengths:
353-1750
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types