HsaINT1007099 @ hg38
Intron Retention
Gene
ENSG00000241322 | CDRT1
Description
CMT1A duplicated region transcript 1 [Source:HGNC Symbol;Acc:HGNC:14379]
Coordinates
chr17:15588388-15593495:-
Coord C1 exon
chr17:15593337-15593495
Coord A exon
chr17:15589228-15593336
Coord C2 exon
chr17:15588388-15589227
Length
4109 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TCTTTACTCTGCATCCACAGAAT
3' ss Score
8.35
Exon sequences
Seq C1 exon
AGAGGTGCTCGACGTGTCCCTTCTCTTCCTCCGGGTCATCAGCGCCTGTGCAGATGGCAAGATCCGAATTTACAATTTCTTCAATGGGAACTGTATGAAGGTGATAAAAGCCAATGGCAGAGGCGATCCTGTGCTGTCCTTCTTTATTCAGGGCAACAG
Seq A exon
GTGGGTGGTAGGTGTGGAGGTCAGAACTGTGAGTGATTCTGTTGGATTTTTTGATTTTTTTCCTCCCCTGGGATACCAGCCCTGGATTTGCTGTCAGGAGGAGAGAGTGTGCAATGCCTCTCTACAATTTTGGCTGGGTGGAGCAATAGTCTTGTGGTGGGGACTAACAGGGCTTTGCACAAAACTTAGTAATCAGGAAGCAATCAACTGTTCATTTTGACTTTTTTTTTTTTTGAGACATAGTTTCACTCTGTCGCACAGGCTGGAGTGCAGTGATGCGATCTCGGCTCACTGCAACCTCCGCCTCTCGGGTTCAAGCAATTCTCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCCCACCAGTATGCCCGGCTAATTTTTAGTATTTTTAGTAGAGACGGGGTTTCACCATCTTGGCCAGGCTCACCTTGAACTCCCAACCTCGTGATCCACCCGTCACGGCCTCCCAAAGCGCTGGGATTACAGGTGTGAGCCACCGCGCCCGGCCTGTTTTGACTCTTAATTCATCCTAGGTGTTTGTGGGAATTGCAGTGGGTGCAACATAACGCTTCTGTAAGGACCACAGTTCTACCAATGTGCAGCCCCTGCTTGCTCTTTGATCATGCCTTTGGCTGCCTGAGAGCTCTATCAGCTATCTTTGATGCCTCACTTCTAATGCAAAGAGACATATAGGAGAGTGGGGGGTGGCAGCAGCAGGGGGTACAGTGGGGGAAAGCTGAGCTGGTGAGCTTACAAAACCAGTACCATGACTGACTGCATTGTATACAGGACTGTGCTTTATATATGCGTAGACTCAGGGTGCTATTATATGAAAATAACCAAATAGAACTAACCTGTAAATTCTACTTCAAGCTCACTTGAGACATCTCTTAATGTCCCTAAACCATATTGCCTTCCTTTTAGTGAAACTTTATTAGTATTATTTACCATCTTAAAGAGGGCAGCCTGGTAATAAGGCTCAGTTAATGAACACTTTTCAGTCATGCTGCTAAAAAAAAAAAAAAAAAAAAAAAACTCTGGCCATTTTTTACTCACAGCATCCAAAGAAAGGTGTTTTTCTTTCGGCTTGAGTGAACGGAAGTCTAAAAGGGATTTCTTATTGGAATGACACCCCGCATTCCATTCCAGCAGTTCCAGCCAAAACAAGTTACTTTTCTAGAGAGTTTATGCTGTTGGTTAAGGTCTTAACATTGCAGCCTTTTGAAGCAGAAGGAAACCTGTATAGAGTATTTTCATTTCTTGTTTATAGTTAAGGGAAGAGCACAGAAAGGGGAAAGCCGCTTGCTTGTAAAACTGGTGGGTTAGGGAGGCAGTGCTGCGGGGGCACAGGAAGGGGACAGGGAGGGCAAGTTCCGGAGCTCTTTTGTCTATGGAGCATTAAAGTGGGGATCAGAGAAGTTAGAAATCATCTCACTTTATAAAGTATAGATGTTCTGTCTACATCTAGAGTGTGTGCAGAGATCCTGGAGTGACAGCATGGAGTGTGTGGTGTCTGTGTGGAGGGTCTATGAAGGAGAAGAGGCCTCCCCATTAGAGAGCTTTCCTCATTGCCAGCAGCAATAGTAATATTGGGTTTGGAAGCTGTGCTTCAAACAAACAAACAAACAAACAAACAAAAACACTGAATTTCAAGACATCTGTGTGCAGAGTACCTTCTTGGCACCCTAGGTACATGGCACTCACTCCAGGAACAGAAATTCATTTAAAAGCATTTTAACTTGAGGCCAGGCGCAGTGGCTCGTGCTTGTAATTCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCATTGAGTCCTGGAGTTTGAGCCCAGCCTGGGCAACATGGCGAAACCCTGTCTCTACTAAAAACACAAAATGAGCTGGGTGTGGTGGTGCACACCTGTAATCCCAGCTACTCAGGAGGCTGAGGCACGAGAATCGCTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACGCCATCTCAAAAGAAAAAAAATGATTTTAAACATGACTATTAGCAGTTTAGCCAAATCCAGACTATCCTTAAACAAATAAGGGCTCTTGTCTGAATGTGCACTCCTAAGTGAGGACTTTTGAAAAGCTCTTTTTCTCTAGCCTCCGGGGAGGCAACTCCAGCCTGCACATGCTGAGGCTCTCTTCAGGAGGAAACTGCCTGGAAGTGTGACAAGGGCCTCTAGCCCTCAGCAAGAACCTGGGCCCTAGGACAACACTGCACAACAGTGGTGACCAAGTTCTCCATGGCCTGGGACTGAACTGCCCATACCAGTCTCCTGTACTACCTGTCCCTAAGGCTGTAATACTTGGCCCTGACTCTGGCCCTGTCTGGGTCTTCCCAGAAAGAGAAGGTTCTTGTTGCTTGGTGCCAGGTTTGAGGAAGTTGAATAGGGTTCAGGCACTCCTGCCAGGGATGGGGGTGTCTCCATCAGATAGGCAGGTGGCTCAGTGCAGGGACCCAAGTGCTGAAGTGGGGCTACACCCTTGAGGAAGGGGGATACTCCCCATGCACAGCCTAGGAAGTCCCACACTGTCTTTCATGGTCTCCACCTCAAATGTCTGCACAATCACTATAAAGGTTTGAGGGAAATAAGAGGGAAGAGGACAGTTGTGTTAAGAGGGAGAGGGAATTGGGGTCAAGTCAGGTGAGCTCCAGGTGGAACTAAGGAAGAGGAACGTGACCGGGAGCAGGAGGGCTGGTGGTGTGCAGGTGTGCTCTGTGAAGGTCAACTATAAACCAGGATGAACACGCAGATGTCATCTAGCCCAGGGATGCCAAGCCCAGGCTTTAAACCCTCCCTTCCCTCATCCACTGCAAACCTCACCAAAGGACCCCAGCACTCTTTCCCACCAGGCTGCAGGCGCCTCAGTCTTCAAAATAACAGCCAGAGGACAAGGCTGCATCGCTCAGCTTACAAACCAAACAAAATCTTCCATTTCCTGATCTGTGCCAGTCCCTCCACTGTATGAAGGAGGACTCCTGAATGATAACAACAGCATACAGATCCCAAATTGAGCCCTCACCATGGTCCAGCACCTTACAAATAACAATTCATTTCATCCTCACAATGACTCCAGGAGGGGAGAAGATTATTAGCCCCATGTGGGAGATGAGGAGACAGTGGCAGAAAGAGGCTGAATTCAGCCGCGAAGGATGCACAGCTCATGAGCGGTGGGGTCGGGCTCCCCATCCAGGCAGCGCCGCCGGCTTCCTTGCTCACCACCGCTTTGCTGACACTGCCTCCCACGTGGATGGGGCTCTGGTTTTAGGTTTATCACAGAACACACAAGCACATACGTTTTAGAATATGGTATTTGTAGATTCATTAAAATCTGACATTTACAGGATATTAAAGCCATTCTAAGAGACAATCATGGTAAAGGTGTAATCGCATTTGTAAGCTTGCCAAATTGGAGTGTAAGAGCTTTTATGAAAAGTTTCAGAAATGTGGCTTACAGGGTAACGGTTTATGGTCAACTGCCTTTTGATCTCTCATGTGAAAAATATGTACTTACATATATTGCAGGAAACCTCACCACTTCCTTCCTAAGTGTCGGTCAAAAACACTAATTACTTGACTAATTAGACTGTGAAACTTCCCTTACAGATGGTAAAAATGAGCTATTTTCACCCCACAAATTTAGTTGTGACATACCACCAAAAAAATGTAGGAATCTTTCAATAGTTTTACTATAGACAGTATGAACGATTTAAGCAAATCATATAAAAATAAATTAGAAACTAATGAAAATAATCTGCCCTTTCATAAGAGGGGAACGCAGGAGGCTGGCTCGTGAGATGAAACCCCTTTGATGGGAGACTGGAGGCCAGCTCCAGGTACCTTCTCCCCGCCCCATGAATTCGTTAGTCCTAGCTTCGTTTGTGATTTTCATCATAGCTTCAGGTACTTTCTTTATCCACCTGTAGTCACAGGTAGGCAGCACTGCTTCCTTTTTTTTCTCCCAGACATTCCCTACAAGGGAAAGTGTATGTCATGTGCACCCACCAGCCAGGATGACACGGTCTCTCTTTACTCTGCATCCACAG
Seq C2 exon
AATTTCAGTCTGCCACATCAGCACATTTGCTAAAAGAATTAACGTGGGATGGAATGGAATCGAACCAAGTGCTACAGCTCAGGGAGGAAATGCCTCCTTGACCGAGTGTGCTCATGTGAGACTCCACATCGCAGGACACTTACCAGCATCGAGGCTGCCCGTGGCCGCTGTCCAGCCCATGACAGGCGGGATGGCCCCAACCACAGCTCCGACCCATGTGTTGGCAATGCTGATCCTTTTCAGTGGTGTGTAGCAGCAGGTATACAGGAAAATGTTGAAGAGCCCCAGGGCTCCTGTGAGTGGATTCACCCCCAAGGTCAGAATGGCAACTCCTGGAACAGCACAACAAGTGGCAAAGGACACAGCTAGCAACGGGCTGGAAAAAGGCAGAGAACGTGGAGTGATCATCTCCAACTCAACTCAATCACACTGCCTAAAATCGGCACTGACAAAGTACAAATAATCCACCTATCCAGTAGAGGCAGCACTGATCTGGCTGATTCCTGGATATGGGGAATCCTCTTTATGAAACAAACTTACAATAAGAAAGAATATGTTTGTGGGAGCTCTGGCTGCTCTTCTTGATTTTGCTAGCTAAGAGTAAAGTGGTTAAGAGAGTCAGGATTAGAGTGTTCTGGATTCATATAGGTTCTGTCCCTTCCTGGCTATAGGGCAGCTAGGTTTCACTTACTCCTCTCTATAAGAGAAATGATCATCTTTTCCTCCTAGGGTTGAAGACTGACTGAGACAATGCCTCCTGCACAGTGTTCCATTTTATATTTAGTCATGAACAAACAACTTCAGACACAATATTGGAAGATTTGGGCAGAAAATACTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000241322:ENST00000354433:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains