DreINT0067789 @ danRer10
Intron Retention
Gene
ENSDARG00000086484 | fbxw10
Description
F-box and WD repeat domain containing 10 [Source:ZFIN;Acc:ZDB-GENE-101021-1]
Coordinates
chr12:35856082-35856603:+
Coord C1 exon
chr12:35856082-35856240
Coord A exon
chr12:35856241-35856379
Coord C2 exon
chr12:35856380-35856603
Length
139 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
ATTTCTGTCATGCTCCTCAGTGT
3' ss Score
8.18
Exon sequences
Seq C1 exon
AGAGGTGTTGGCAATGTCTTTTCTGTTCCTGCGAATCATTACCGGTTGCATGGATGGAAAGATCCGGATCTTCAACTTTCTTAATGGAGATTGCCTGAGAGTTATCAAGACAAACATGAAGCAATGCCCCGTGCTTTCTCTGCACACGCACCACAACAC
Seq A exon
GTGAGTTTACCCTGTGTCCGGATATATTACTCAGTTTTATAAACACAATTTTATGATGCTGTTCTTTCTTCTAATGTTATGCAATTGGAAAAAGATGTTGTAATATGGCTTGATGGATGATTTCTGTCATGCTCCTCAG
Seq C2 exon
TGTGGTTGTAAACACCAGAGGCAGTGTTCTGATGCTTCAGTTTGCTGAGGTTCAGTGGGACTACTCTGCCAGAGCTGTGAGGGATTTAACTGAGCAGTTCCACGTCTCCCCTAAGAATGTGCCAAGGAGCACTGAGCGGGCGACTCAAGGGGGCTCATCCGGCCTAAAAAGTCATCCACATCATTCTAAAAACCTCTCAACTACAAATATGCAGCATGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086484:ENSDART00000123825:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.553
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(69.4=46.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGAATCATTACCGGTTGCA
R:
GGCACATTCTTAGGGGAGACG
Band lengths:
253-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]