HsaINT0065317 @ hg38
Intron Retention
Gene
ENSG00000187239 | FNBP1
Description
formin binding protein 1 [Source:HGNC Symbol;Acc:HGNC:17069]
Coordinates
chr9:129978347-129979374:-
Coord C1 exon
chr9:129979318-129979374
Coord A exon
chr9:129978613-129979317
Coord C2 exon
chr9:129978347-129978612
Length
705 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGT
5' ss Score
7.44
3' ss Seq
GCGTGTGTTCTGTTCCATAGGTA
3' ss Score
11.23
Exon sequences
Seq C1 exon
GAATCTTTCAAAGAAGTACCAACCTAAAAAGAACTCGAAGGAGGAAGAAGAATACAA
Seq A exon
GTATGTTTACCATTGAAAATTGTCTTGTAATAGACACATGCCATTGATGACTACACACGGAAAGGAGAAATACATGTCTATAAAAATAAGTTGCATTTCCCATTCATTTTGTGTCAGTTTTTAAATTGGAGGAGAGAACAATAAAAACATAATTAACTTTTCTTATATGGAGTCACTGGACCTATGCCAGATTGTTTCAATTAAAGTAATTAGGAAAACTTTAGAATGTAATTAAGCAAAAACAGGAAGTATGGAATCTGCATTCTAGAGTTGATTTGGTTTGGCACTGTCAGGAGTCCCTGTCATGCTAGTCATTCATCCAAGAAATATGTCAATTTCAGTCAGCAATTAAGGCATCTTAACACAGACCACTCAAATATTACATCTCTAATGTATATCTAAATATCCTTTACATTAGTACATATAGCATGTATATGAATTTTGGATTATATCTTGACTAAGTATCAATGAAGCCAAATATTACATTATGCGGAGCGGTTCAGTTTTGCAAAATGAAAAGTGTTTCAATTGTAATTAATTCTGAGCCATTTTGTTGAGAACACTTGATGTGTAATGAATACTCAGGATCCTATGGGAGGTGGATGCCAATTAACCTGATTTTAATTAATATTTTCTTGGTGTAAAGCAGAATATGAATGAATGTGGCCTTGTGTGAAACAGAGTGGCGTGTGTTCTGTTCCATAG
Seq C2 exon
GTATACGTCATGTAAAGCTTTCATTTCCAACCTGAACGAAATGAATGATTACGCAGGGCAGCATGAAGTTATCTCCGAGAACATGGCATCACAGATCATTGTGGACTTGGCACGCTATGTTCAGGAACTGAAACAGGAGAGGAAATCAGTAAGCAAAACTTTATTCTTTTTCTTCCTAAAAGATGGACCAAACACAGTGGGAATATCCCTAGAAGATTAAAATTAAATAAAACCATATAAGACTATGGGTCTTAAACTCATACCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187239:ENST00000491905:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.207 A=NA C2=0.089
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(34.5=100),PF057016=WEMBL=PU(4.0=30.0)
A:
NA
C2:
PF0061118=FCH=PD(29.8=56.0),PF057016=WEMBL=PU(29.6=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCTTTCAAAGAAGTACCAACCT
R:
AGGTATGAGTTTAAGACCCATAGTC
Band lengths:
322-1027
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development