MmuINT0065299 @ mm10
Intron Retention
Gene
ENSMUSG00000075415 | Fnbp1
Description
formin binding protein 1 [Source:MGI Symbol;Acc:MGI:109606]
Coordinates
chr2:31096027-31097150:-
Coord C1 exon
chr2:31097094-31097150
Coord A exon
chr2:31096175-31097093
Coord C2 exon
chr2:31096027-31096174
Length
919 bp
Sequences
Splice sites
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
3' ss Seq
CCGGTGCAATCTGTCCTCAGGTA
3' ss Score
10.3
Exon sequences
Seq C1 exon
GAATCTTTCAAAGAAATACCAACCTAAGAAGAACTCGAAGGAAGAGGAGGAGTACAA
Seq A exon
GTAGGTGCATTGCTGGCAGATGTGTAGTGAGATGAGATGTGTGTAGTTGGTGCATTGCTGGCAGATGTGTAGTGAGATGTGTGTAGCTGGTGGTTGGGAAGTGGGTGGGAACTGCATCTTGTCATATAAGTACCGTCCCACCTTCCTGTCTATGTCCATGAACCTGAGGGGCACAATGAGAACCTGGACCCTAAGCCACTGGACCCATTTGAGACTGTTTCCATTAAACTCTAAGAAAAAGTCTAGGAAGTGCTGCAAGCCTGTGTGGGCAGTGTGGGGGCTGGGGAAGCCCTGGAGTGGTGGCCTCAATCTTCCCAACGCTGTGACCCTTTCATACAGTTCCTGGTGTTGTGGTGACCCCCAGATGTAAAACGATTTCATTGCTACTTTGTAACTATAATTTTGCTACTATTATGAATTGTAATCTAAATAGCTGGTGTGCAGAATATCGGACCTTGTAAAAGGGTCATTTGACACCCCGCTAAGAGGTCACAACCCACAGATTGAGAACCACGGCCCTAGAGTCTGGGCTCCCTTCTGTATCGCCAGAAGCCTTACGTCACCTGCTCATCCAGCCAAGAGCCTTGACTGTCTCAGTCAGCAGCAATGGGTCACTGTGCGAGGTGGAAGTACCGTCTTTGATGTAGGTCCAGGGGCCTGGTGTTCTTTGAGGACCCGGTCGGACACGGGCGGGTGAGTTTGCGACCATCTCTGGCCTGAGAATAAACAGAGGCAGAGGCTGCATTTCACAGAGCACCCGTGGCCGGGTTTGGGTTGTAATTAATTCTGAGCTGTTGTGTAATGAACCGGCAAGATCCTCTGGGAGGCAGATGCAGGGCAGACTGATTTTAATTACTATTTCCTCAAGTGAAGCGAGTGAGGCTGGAGGTGGGCTTGAGCCGGTGCAATCTGTCCTCAG
Seq C2 exon
GTACACGGCTTGCAAAGCCTTTCTTTCCACCCTGAATGAGATGAATGACTACGCCGGGCAGCACGAGGTCATCTCTGAGAACATGACGTCACAGATCACGGTGGACCTGATGCGCTACGTTCAGGAGCTGAAGCAGGAGAGGAAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075415:ENSMUST00000113560:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=NA C2=0.109
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(20.2=100),PF102754=Peptidase_C65=PU(9.6=50.0)
A:
NA
C2:
PF0061118=FCH=PD(29.8=56.0),PF102754=Peptidase_C65=FE(47.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACCAACCTAAGAAGAACTCGAAGG
R:
CGATTTCCTCTCCTGCTTCAGC
Band lengths:
190-1109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types