RnoINT0061825 @ rn6
Intron Retention
Gene
ENSRNOG00000008258 | Fnbp1
Description
formin binding protein 1 [Source:RGD Symbol;Acc:621350]
Coordinates
chr3:9926729-9927802:-
Coord C1 exon
chr3:9927746-9927802
Coord A exon
chr3:9926877-9927745
Coord C2 exon
chr3:9926729-9926876
Length
869 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGT
5' ss Score
7.44
3' ss Seq
CCTGTGTGATCTGTCCTCAGGTA
3' ss Score
11.28
Exon sequences
Seq C1 exon
GAATCTTTCAAAGAAATACCAACCCAAGAAGAACTCGAAGGAAGAAGAGGAATACAA
Seq A exon
GTATGTCCAAAGCTGGTAGATATAGTAAGATATGTGTGTAGCCGTGGTTGTGAAGGGGGTGGCTTCCCTTGTCATATAAGTACTGTCCTGCCTTCCTGTCTGTGTTCATGAACCTGGGGGACTCAGTGAGAACCTGGAGCCTGAGCCACAGGACCCACTCCAGACTACTTCCCTTAAAGTAACCAGGGAAAGTCGTAGGAGGTCCTGCAAGCATTCACAGGCAGTGGGGGAGGCAGGGTAAGCCCTGGGGCGGTGGCTCTCAATCTTCCAATGCTATGTGACCTTTCACACGGTTCCTTGTGTTGTGGTGACCCCCCCCCCCCAATGTAAAACAATTCCGTTGCTACTTTGTAACTATAATTTTGCTACTGTTATGACTTGTAAATATCTGATGCAGAGTATCTGACTTGTGACCCCTGTAAAAAGGTCATTTGACACCCCCCAAGCCCCCACCTGAGGTCTTGACCCACAGATTGAAATCCACTGCCCTAGAGCCTGGGCTCCCTTCTGAGTCATCAGAAGCCCTGCTTCGCCTGTTCATCCAGCCAAGGGCCCTAACTGTCTCAGTCAGCAGTGTTGGGCCATTGTGCATGGTGGAAGGTACCGTCTTTGATGTAGGTCCCGGGCCCGGTGTACTTTGTGGACTTGGGTGGGGACCATCTCTGGTCTGAGATGAAACAGAGGCAGAGGCTGCATTTCACAGAGCCCCTGTGGCCGTGTTTGGGTTGTAACTAATTCTGAGCTCCTGTGAAATGAACCTGGCAAGATCCTCTGGGAGGCAGATACAGGGCAGACAGATTTTAATTAAATAAGGCCTGTGAGGATGGAGGGGGCCTGTCTGAGGAGGAGCCTGTGTGATCTGTCCTCAG
Seq C2 exon
GTACACGGCGTGTAAAGCGTTTCTTTCCACCCTGAATGAGTTGAATGACTACGCCGGGCAGCATGAGGTCATCTCCGAGAACATGACGTCACAGATCACGGTGGACCTGGTGCGCTACGTACAGGAGCTGAAGCAGGAGAGGAAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008258:ENSRNOT00000011224:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(20.7=100)
A:
NA
C2:
PF0061118=FCH=PD(30.4=56.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTCAAAGAAATACCAACCCAAGA
R:
TTCCTCTCCTGCTTCAGCTCC
Band lengths:
198-1067
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]