GgaINT1013384 @ galGal4
Intron Retention
Gene
ENSGALG00000004088 | FNBP1
Description
formin binding protein 1 [Source:HGNC Symbol;Acc:HGNC:17069]
Coordinates
chr17:5784965-5787742:-
Coord C1 exon
chr17:5787686-5787742
Coord A exon
chr17:5785113-5787685
Coord C2 exon
chr17:5784965-5785112
Length
2573 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
TGCATTTTTGTCCTCTGCAGGTA
3' ss Score
12.07
Exon sequences
Seq C1 exon
GAATCTTTCAAAGAAATATCAACCCAAAAAGAACTCCAAAGAAGAGGAAGAGTACAG
Seq A exon
GTACGTTCATGGCGTACTGCTGGGTGAGCATGCATGATAGAGGAAGGGGGAGAAGGCTCTGTCACCTGCTGGGATTTGGCCAGTCAAGCAGTGCAACACACAGGTTGTTCCTGCTACTAAGGAGTGGAGTTGTAAGGTAGTTTGGATTTGCCCTGTAACTGTTCAGTTCCCTTTAAATGTTCTGGGTACTGTCTTCTGGTTTTTTTTGTTTTTTTTTCTATGTACCTTAAAATCTTCAAGCCAGCCTATTCAATCCTGGTTCTTTGAAGTGCATGACCAAACTCTGATTAGCTCCAGCAGCAACAGAAGCCGCTGTTAATTTTAGCATGAAACTTGGGCAGTCTGTACAAGTATTACATTCTCAAATGCACTGACAAGGCAGATTAGTGTGTTACTTGAAGGATCATATTATAACACCACAAGAGAAGTCGGTGGCTCTTGAAGGGTAGGAGATGTAGTTTGTACGGGCAGCATCCTGGAACGGGGGAACACATGACTGGCAGCCGTTGAAGAATGCTGCATCACCCAGCTACCTGCTTCTGATTTAGGTGCTCAGACTGTGTCTCCCTGGTGGCCGGGGACTGATGGAGCATTTGCAGAGAGCAACTGCAGTGTCAAAGCACAGCTCCTTTGCTCTGTGACACTGGAAATGCATATGGATGATAGTAAGCCATGCCATTAAAAACACTCCTTTCCTTGATCAAAGTTATTCTTTAAAGAGAACTTTCTAGAAGAGAAGCTTTCCAATGGACAGGCTGCATGTCAGAGCTGTAACCTTTTCCTTGGAGCACTCTGACTTTTTCTAAAATTACTCCACCTCAGTGTTTTGTAATGCATCAGCTCTGAACGAAGGCACCATAGAACATTCTGACCCTGCAGCCCTTTTCTGCGGGAGGCTGCTCTGCTTTCTTAGAGCCTGGCAGCAGACTTGAACCCTTGACCTCAAAATCTGAAACATTTCACATGAGTTTGGATTCAAGTCCAACTCTTTGCTTATACTAATTTAGATTTTTGGTTCGGGCCCCCCTTCCCACCTGCTGTGTACAGCTACTCGAGTCATTCATATCAACTGAGATAACAGCCTTTTCATTTTGGTTTTGATTTATTTTTGGTAACATTGTGTGGGAATCAGTTATTGATGCTATTGTTTCCTAAAACACTGATATTTACACAAGGAAGCTCATCTTACCAGCACAATGGCTGTTTTTCTTTGTACTTGGGATTAGGAAGAGATGTGCCTTTGGATAGCTATACCATAAATGGCACTTTGATACCATTCACTCGATAATTTTGAGTTTACTACTAGGTTTTGTGGGGTTTTTTTAACACATCTTCGTCTGCTTTTGTAAAAGGATAGTGCAGCTAAATGACTCCCGTGATGTGGCACAGAAGATTCTGTGTATCCCTTGACCTTTTAAATGGAGTGTTCACCTCAGCATACTTCCCCTGTGTCTCTAAATAACGTCTGGGGGTTTGTCATGTAGCCTTTGGGTGCCTTGGATGCTGCACTGAGATGGTCTAAAATCCTGCTTTCAAGCTTATTGTCAGTCTGCAGTTCTGTCTCTGGTTCCCTGTCTTTTGCAACTGGGATGTCTCTTGAGGCACCACAGCTTGGCTGTGAATGTAGCTGCTTATGTTGGTTTGGGTCTCTTTTCTTAGGTATTTTTCTCCTGTTTTTTTTTTCTTTTTCTCTGATGCCTTTCATCCCCAGTCATACCATTCCTTTTTGTCCTCTAAATCTCTCCGCTTTTTCTTTGGATCTTCACCTAAGGAAGATGTTTTTATTGCAGACGACTACTATTAATATTAATAGTTTTGCTAGTATGTACAAGTGCAGTGCTTCAGAGCAGCTGTCTTCCAGCTGACCAGCACAAGCAGAGGAATTTAAATGCAGCTCTGTTGGCTCACTGCTGAACAGGCCAGTGACATAATCTGCTGTTTTTGAAATTGTGTGCACAGATGTTCATTTCTCCCTTTTAATAATACATGAAATGTTGTACTGGAGATTATCTAATATGAAAAAACAAACCTTGCAGTGGAAAGTTTAAATATAAACTATATGGGTTTACAGTAAATACGTGGTGAGTAAACTCACTATCTTTCTGAAAAGTTTGTAAATTATAGCCAATATACATCCAGCAGGCACTTGGAAAAGTTCTCTTTTCTGCACTGTGCTACCAAAGGGTGGTTGTTCAGGCTGGATTTTGCCAGGTTGGGTACAGTGGTGACTCTGCCGTGGAGTGTAGGGCTTGGAAGAGTGTAGCTCAAAACTGGTGAGTAAAGATTAGCACAGTGAAGTCCCAGAGCTGTGCTGATAAAACATCTGGCACTCTGAAAGTGCTGTATCTTAAGAGCCGATGTCAAACTGTCTAAATCAAGATTAATTTATCAGACAACTGTCAGTGTTTGGGGCAGGCTTGCTTTTGAAAAATTCTTTCATGTGAAACTGTGCTAATCCGTATTTAGTCTCATGCAGCAATTGTAGATGCTTAAGAAGGATTCGACCTCCCTTTTCAGTGTGTGTTTCTGGAAAGAAAGGGACTAAAAGCAAAATGCATTTTTGTCCTCTGCAG
Seq C2 exon
GTACACATCAACTAGAGCCTTCCTAGCCACTTTAAATGAAATGAATGACTATGCCGGACAGCATGAGGTCATTTCAGAGAACATGACCTCTCTTATCATTGGAGAGTTAACTCGCTATGTGCAGGAGCTGAAACAAGAGAGGAAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004088:ENSGALT00000006504:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.100
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(20.4=100)
A:
NA
C2:
PF0061118=FCH=PD(30.1=56.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]