DreINT0069230 @ danRer10
Intron Retention
Gene
ENSDARG00000036156 | fnbp1a
Description
formin binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-081105-105]
Coordinates
chr8:11586608-11587663:-
Coord C1 exon
chr8:11587607-11587663
Coord A exon
chr8:11586756-11587606
Coord C2 exon
chr8:11586608-11586755
Length
851 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
TTTTTCCGATTTCCAATCAGGTA
3' ss Score
10.07
Exon sequences
Seq C1 exon
GAATCTGTCTAAGAAGTATCAGCTCAAGAAGAACTCGAAAGAAGAGGAGGAATACAA
Seq A exon
GTGAGTGAGGCCAGTTTGGCATTCATAAATCATGTGCATGTGCATCAGTATCATATCTGTAATCATTTACTGATGATGGCTCAAATTTACTCGCATAAAACAATTAATTCCTTATGTACTATCATTTACTAGTTTTAAGTCAGTATTAAAAGTGCTATTTAAAAAAACTATTTTAATAGATTTTAAAATGTAATTTATTTGTATAATGAATTGTCTGCATAATTGTTCTAGTCTTCAGTGTCACATGATCCATCATAAATCATTGTAATATGCTAATGCATTATTGTTGTCATCATCAATGTTGTTGTAATAGATTGAATCCTGGGTAAAGAAACTAATATTTTCTTTCCAAAAAACAAATCTGACTTAAACGTTCATAGCATATATGCACAAATTGGTTTTATTTAGACGTCAAAGTTGTTTGATTTGATCGCAGTAAATTTTAAGTACATTTTATGTGACAATTAATTTTTCAGAATATATATTATTTAATTTAATATTTACTAACCACCCTAGAATTATCTGGACACTTCAGCAAGGCCTGTATGAATGCTTGTATATAATGCATTATATAACAAAATATCAATCCTTTAGGAAATATTATTTAAAAACTGTCTGAAACATTTAAAGTTAAAATATAACTTATCACCATGACATTAAATCACAAATATTAACATGTATTGAGAACACTATGTATTTTGCTTTCATTATATGAGTAGAATTTGCTTTTGTATTTATGAGTCATAATCATGAGTGGACCAGTCCTAAATAAGCAAAGCGATATTATGTGTATCACATTTCATTTTTGCCATTTTGTGATGCTTCATTACATTTTTCCGATTTCCAATCAG
Seq C2 exon
GTACACAACATGTCGAGCGTTTCTGATGACCTTAAATGAGCTGAACGACTACGCAGGCCAACACGAAGTCATTGCGGAAAACCTGTCCTCCCAGATCATCGCTGAACTGAGCCGCTACACCCAAGAACTAAAAGCTGAACGCAAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036156:ENSDART00000091752:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.060
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(20.2=100)
A:
NA
C2:
PF0061118=FCH=PD(29.8=56.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCTGTCTAAGAAGTATCAGCTCA
R:
GCGTTCAGCTTTTAGTTCTTGGG
Band lengths:
198-1049
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]