HsaINT0065317 @ hg19
Intron Retention
Gene
ENSG00000187239 | FNBP1
Description
formin binding protein 1 [Source:HGNC Symbol;Acc:17069]
Coordinates
chr9:132740744-132741653:-
Coord C1 exon
chr9:132741597-132741653
Coord A exon
chr9:132740892-132741596
Coord C2 exon
chr9:132740744-132740891
Length
705 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGT
5' ss Score
7.44
3' ss Seq
GCGTGTGTTCTGTTCCATAGGTA
3' ss Score
11.23
Exon sequences
Seq C1 exon
GAATCTTTCAAAGAAGTACCAACCTAAAAAGAACTCGAAGGAGGAAGAAGAATACAA
Seq A exon
GTATGTTTACCATTGAAAATTGTCTTGTAATAGACACATGCCATTGATGACTACACACGGAAAGGAGAAATACATGTCTATAAAAATAAGTTGCATTTCCCATTCATTTTGTGTCAGTTTTTAAATTGGAGGAGAGAACAATAAAAACATAATTAACTTTTCTTATATGGAGTCACTGGACCTATGCCAGATTGTTTCAATTAAAGTAATTAGGAAAACTTTAGAATGTAATTAAGCAAAAACAGGAAGTATGGAATCTGCATTCTAGAGTTGATTTGGTTTGGCACTGTCAGGAGTCCCTGTCATGCTAGTCATTCATCCAAGAAATATGTCAATTTCAGTCAGCAATTAAGGCATCTTAACACAGACCACTCAAATATTACATCTCTAATGTATATCTAAATATCCTTTACATTAGTACATATAGCATGTATATGAATTTTGGATTATATCTTGACTAAGTATCAATGAAGCCAAATATTACATTATGCGGAGCGGTTCAGTTTTGCAAAATGAAAAGTGTTTCAATTGTAATTAATTCTGAGCCATTTTGTTGAGAACACTTGATGTGTAATGAATACTCAGGATCCTATGGGAGGTGGATGCCAATTAACCTGATTTTAATTAATATTTTCTTGGTGTAAAGCAGAATATGAATGAATGTGGCCTTGTGTGAAACAGAGTGGCGTGTGTTCTGTTCCATAG
Seq C2 exon
GTATACGTCATGTAAAGCTTTCATTTCCAACCTGAACGAAATGAATGATTACGCAGGGCAGCATGAAGTTATCTCCGAGAACATGGCATCACAGATCATTGTGGACTTGGCACGCTATGTTCAGGAACTGAAACAGGAGAGGAAATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187239-FNBP1:NM_015033:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(34.5=100),PF057016=WEMBL=PU(4.0=30.0)
A:
NA
C2:
PF0061118=FCH=PD(29.8=56.0),PF057016=WEMBL=PU(29.6=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCTTTCAAAGAAGTACCAACCT
R:
TCCTCTCCTGTTTCAGTTCCTGA
Band lengths:
200-905
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)