HsaINT0076824 @ hg38
Intron Retention
Gene
ENSG00000180448 | ARHGAP45
Description
Rho GTPase activating protein 45 [Source:HGNC Symbol;Acc:HGNC:17102]
Coordinates
chr19:1065923-1068744:+
Coord C1 exon
chr19:1065923-1066163
Coord A exon
chr19:1066164-1068413
Coord C2 exon
chr19:1068414-1068744
Length
2250 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
TCCCCTCGGACCTGCCCAAGGAG
3' ss Score
1.41
Exon sequences
Seq C1 exon
AAGCTTACAGGAGCCCGGTGTCCCGGAGCACAGGCCAGGGCCGGGCCAGAAGCCCATCCGACATCCAGCTGACCCTCACCCTCTGACCCCAGCCCTCAGCGCCATGAGTCGGGGGCAAAGAGTTCTCAAGGGTCTGCTGGGCTGGGTTTGCACTTGGACCTGGGCCTGGAGAGCCAGACTTGGAGCAAGGGGCTGTGGCCTTCATGTCCTGTGCCCCAGAGATCTGCCCCTCCCACCCGAG
Seq A exon
GTAGGTGGGAATGGGGTTTGGGAAAGGAAAGAGGTTGGGGTTTTGGGATTGGGGGTGGGGTTCTGGAAGGGGACAGCAGGGAGACTTGGGGAGGGGGGAGAGAGTTCACACTGCGGGGTGGGGGTTGGGGGAAGGTAGGAGGCTGGGATCTGTATGCCTGCAGATGCCCCAGCTCTTGGCCAATGCCGCCTCAGGCTGTTATCAGCAACGGGTGCCTGCGTCCTGCTGCCCAGCACGTCCGGTGGTCCAGAGTCACTGGAATGCAGCTTGGGAGGCGGGGCTGGGGACCTTAGCTAAGGGCAGGTCTGGGGCAACATGATATGGCCCACAGGGCTGCTGAGAGGTAACCAGGTGTCCTCAGCATATTCTGCCGATGGTGGGGTCCACACCACACTTTGGGGACCCCTGTGCAGGCAGCCCAGGACCAGGTGGACGTGGGGACCCAGACGGACGTGGGGACCCAGACGGACAGGGCCCGGTAACCTGGATTGTTCTGACTTCCTGGACGTCTTTGCCCCCAGGGTTTCGGTTCTGGGCCTCAGTTTCCCCACCTGTCCTCGACCTGACCCACTTCACGGGGCTGCAGGGCGGGTGATGGGGGGGACCCTACTCTGCCCGGCCCTGCTGGGGCCCGGCCACACCCTAGGGTCTGCAGGAGAGGCGGTGGAGCGGGCTTGCCTTCAGGGAAAAGGGGGCTGCAGGGGCGCAGCTTCGGCCTGTGCGTGTGTCTGGGGTCTGAGGGCGAGGCTCCAGGGGCTTGGTGGCGTCTGAGCGCGTGTGGAGGTCCGGGTCTCTGCGTGTCATCGTGCACGTGTCTGTGCACGCCCACTCGCGTCCGGGAGTGAGAGTCAGCGCCCTGCAGTCGGCCGCCCCGTGCCCGCCAGCGTCAGGCAGGGGCTCCCGGTCCCACCCCGCGAGCGGCGCGGCTCCGAGCTCCCGAAGGCGGAAGCGGGGGGCGCGGCCCGGGGCTGGGGGCGGGGCCTGCGACCTCACCTTCGCGCCCACTCCGCAGAGCCGCAGGCTGAGGCCGGGAAGGGTCGGGGGCGAGGCCGCGTCGCCGCCTCCCCGAAGCCTTTTCCTGTTGGGGGGAGGGCCCGCCAGTGACGGCCGGGCCTGTCACGTGGGCCTGACAGCTGGGGAGGGGGTGGCCGGCGACAATGTGGTCCCGAAGCGGCCAGCGCCGGGAGCTGCAGCGCTGAGACCCCCAGCCCGCCCCCTCGGGCTCCCGGCCGGGGCCCCATCATGTTCTCCAGGAAGAAACGAGAGCTCATGAAAACCCCTTCCATCTCGAAAAAGAACCGCGCGGGAAGCCCCAGCCCGCAGCCCTCGGGGGTGAGTGGAGCCCGGGTGAGACCCGGAGCTGACGCCGGGCCGCAGGGGGACAGGGACCCGCCCTGTGCTCGGGGCTCATGCTGGGGCGGCGGCTGGGGGCTCGTGCCAGCTACAGCCCCTACCGGGCGGGACGGCAGGGGCCACAGCAGAGAGGCCGGGACCCCGGCATTCAGCTCACGGTAGGGACCCTGGGAGTGGTGGCCGCCTCCCTCCACTCCATCCAGGGCTGGCCGCGGGGCCCAGGGAGCAGGAAGGGAGGGTGCCGGGTTGGGACGATGTTGTGTTTGGGCCGCTGCAGGTTGGGGGCTTAGGCAATCTGGGGGCTCTAGGGGCCGTTGAGATGGGAGGGCTGTGGCCTGGCCATTGGGCTGAAGGTTGACCGGGCAGCAGATCCTCTAATGGGATCCACCAGGTTCAGAGGTTGGGGAGTGTCCCCAGGCCTGGGGTGTCTACAAAGCTGGGGGGGGGGTCTACAGAGCTTGGGGGTCCGGGATGTCTACAAGGCCTGGGGCTGCCCATAGGCTCTGGGGTTCCATGGACCTTTAGGGGACAGACAGAGTCAGAAGTGTGTTCACTTAAAGCACCTGCGTTGTAGGAGCCTGAGGGGGGCTTGAAGGGCTGAGGACCCTCCCCACCCCCACCAGGAAGTGGGGACCCCCCTCCCGCGCCTCCCCGCAGGCCCCGCCCCGGCTGTGGTTTGGGCAAGGACCGTTGTTTGTGAAAGCTCTAGGGAAGAGGATGTTGGGTAACAGGTGGGGGGGTACACTACCAAATCTCGGCCCTGTGACCTCTGGCCTTTGACCCCTGTGGGGTCAGGGTGATGGTGGCCCTCCACAGCCCCACTTCATTTCTGGGGAAACTGAGGCCGTGTCCAGGCCGGAAAATCCCTTTAACGAGCTCCCCTCGGACCTGCCCAAG
Seq C2 exon
GAGCTGCCCAGGAAGGATGGGGCTGACGCGGTGTTCCCCGGACCAAGCCTGGAGCCGCCCGCTGGGTCCTCCGGCGTCAAGGCCACAGGGACCCTCAAGCGGCCCACCAGCCTGAGCCGCCACGCCAGCGCGGCTGGCTTCCCCCTGTCGGGTGCTGCCTCCTGGACACTGGGCCGGAGCCACCGGAGCCCACTGACAGCCGCCAGCCCGGGCGAGCTGCCCACCGAGGGTGCCGGCCCGGACGTCGTCGAGGACATCTCCCATCTGCTGGCGGACGTGGCCCGCTTCGCTGAGGGCCTTGAGAAACTTAAGGAGTGTGTGTTGCGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180448:ENST00000539243:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=NA C2=0.609
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development